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2024-03-29 16:35:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001089872            1930 bp    mRNA    linear   VRT 24-MAY-2021
DEFINITION  Xenopus laevis homeobox D8 L homeolog (hoxd8.L), mRNA.
ACCESSION   NM_001089872 NM_001089873
VERSION     NM_001089872.1
KEYWORDS    RefSeq.
SOURCE      Xenopus laevis (African clawed frog)
  ORGANISM  Xenopus laevis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Xenopus.
REFERENCE   1  (bases 1 to 1930)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC060408.1.
            
            On Jul 25, 2007 this sequence version replaced NM_001089873.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC060408.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN04111052 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1930
                     /organism="Xenopus laevis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8355"
                     /chromosome="9_10L"
     gene            1..1930
                     /gene="hoxd8.L"
                     /gene_synonym="hox5.4; hoxd-8; hoxd8"
                     /note="homeobox D8 L homeolog"
                     /db_xref="GeneID:398875"
                     /db_xref="Xenbase:XB-GENE-920126"
     misc_feature    8..10
                     /gene="hoxd8.L"
                     /gene_synonym="hox5.4; hoxd-8; hoxd8"
                     /note="upstream in-frame stop codon"
     CDS             53..754
                     /gene="hoxd8.L"
                     /gene_synonym="hox5.4; hoxd-8; hoxd8"
                     /codon_start=1
                     /product="homeobox D8 L homeolog"
                     /protein_id="NP_001083341.1"
                     /db_xref="GeneID:398875"
                     /db_xref="Xenbase:XB-GENE-920126"
                     /translation="
MSSYFVSPMYPKYKDAINPAFYECPYGQEVGSSSSRAPLVYSSSSSAPQDYYHHHPGTLPSPGYQPAPCGITCHGDPSKLYGYDHFQRQHIFTTHQESEPVQYPDCKSPCASVGADPEHLHQNSPASHMFPWMRAQVAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENSKDKFPVSSQEGKEEADKKEGIHLEQQGREGTN"
     misc_feature    476..646
                     /gene="hoxd8.L"
                     /gene_synonym="hox5.4; hoxd-8; hoxd8"
                     /note="Homeobox; Region: Homeobox domain"
     misc_feature    order(476..490,494..496,545..547,563..565,602..604,
                     608..613,620..625,629..637,641..646)
                     /gene="hoxd8.L"
                     /gene_synonym="hox5.4; hoxd-8; hoxd8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(482..484,491..493,611..613,620..625,632..634)
                     /gene="hoxd8.L"
                     /gene_synonym="hox5.4; hoxd-8; hoxd8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    485..643
                     /gene="hoxd8.L"
                     /gene_synonym="hox5.4; hoxd-8; hoxd8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      
aaacaagtagaggtgggggtctagtcactcactcgctgctgctccagcccacatgagttcctactttgtcagtcccatgtatcccaaatacaaagacgccataaatccagctttctacgagtgtccctatgggcaggaggttggcagcagcagcagcagggccccgttggtatatagcagcagcagcagcgcccctcaggactactaccaccaccaccccgggaccctcccgagtccaggctaccagccggcaccctgtgggattacttgccacggtgacccctctaagctttatggctacgatcatttccagaggcagcacatttttacgacccatcaagagtctgagccggtccaatatcctgactgtaaatcgccctgtgcgagtgttggagcggatccagagcacttacatcagaactcgcctgcgtctcacatgttcccctggatgagagcacaagttgcccccggtagaaggaggggaagacaaacctacagccgcttccagaccctggaactggagaaagaattcctatttaacccttacctgaccaggaagaggagaatcgaggtctctcacgcactgggactcaccgagagacaggtcaaaatttggtttcaaaacaggaggatgaagtggaaaaaagagaacagcaaagacaagttcccagtctcctctcaagaagggaaagaggaggctgacaagaaagaggggattcacctggagcaacaaggcagagagggcactaactgaacttattggggttaatattccaaattgtggtatatgggatgcactgcactctgactgcacctctccttcattctgcacaagtcaccggggtgtatcactacctaagagacagaaagcaacgtctgtgtgtatatgtatctgcacacgcgcaaatgcacactaggaaatatgccaatgtggttttctgtcacaggggcaacagatttcaggcaataaaactgcaaaaattaatttcctatcaaataattttatatgtagttgtaatatacacgttttgtaatcaaaatcacgtgcactcgaggatcaggggaccctatttttgtatatttgtatgttatatttacgcaaacgcaaaatatatattttaaaatgagaggcgatagctctaatgattttttttgttgcctaaaatgaccaaattcaagtttatgtgtattttattataatctataatatgtctttcgatgctggaatagcaactcgttttcaaactataatgtatatatttatgttctaatttcaactggaatatttttttagtgaacatgttacaattgggctgattaaacttcagtatcgctgagtaaaccacatttctagaggatcagctgaatgaactgttagatctttatgcaccataaactattatttgaaatataattgaaactattaggtaaaaatgaagaaaaactgcagtttttaagcttaacaattaagttattaaaatgcactatgctatgtacgtatgtatgtgactatagacattatatatatagtgtatatatatatatatatgtatatatatatatatatatatatatatatatatgtatatatttacgcattttgcaattaaacaagcagcaatgaacaatttaatagatggagttaatcaatctaaatattttacttcctgtcgttaatttatcttgtttctccctatgattcgaataagagaattgctattattgtgatgtgtaattatttcgagcccctttttttctttgtgaaatttcggttataaatgaaatgtgtcttattctatttgaatcagttctaattaacttaagaatgaaatgtattttattagtacacatcgattttaaaaaaaaaatacaaactgctgcctttggagcctttgttgaaataaacgattaaaccaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]