GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2026-06-15 09:04:38, GGRNA.v2 : RefSeq release 233 (Jan, 2026)

LOCUS       NM_001088831             660 bp    mRNA    linear   VRT 02-APR-2025
DEFINITION  Xenopus laevis caveolin 1 L homeolog (cav1.L), mRNA.
ACCESSION   NM_001088831 NM_001088832
VERSION     NM_001088831.1
KEYWORDS    RefSeq.
SOURCE      Xenopus laevis (African clawed frog)
  ORGANISM  Xenopus laevis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Xenopus.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Breuer,M., Berger,H. and Borchers,A.
  TITLE     Caveolin 1 is required for axonal outgrowth of motor neurons and
            affects Xenopus neuromuscular development
  JOURNAL   Sci Rep 10 (1), 16446 (2020)
   PUBMED   33020520
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
REFERENCE   3  (bases 1 to 660)
  AUTHORS   Razani,B., Park,D.S., Miyanaga,Y., Ghatpande,A., Cohen,J.,
            Wang,X.B., Scherer,P.E., Evans,T. and Lisanti,M.P.
  TITLE     Molecular cloning and developmental expression of the caveolin gene
            family in the amphibian Xenopus laevis
  JOURNAL   Biochemistry 41 (25), 7914-7924 (2002)
   PUBMED   12069580
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF455042.1.
            
            On Jul 25, 2007 this sequence version replaced NM_001088832.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF455042.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00012418, SAMD00012419
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Xenopus laevis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8355"
                     /chromosome="3L"
                     /map="3L"
     gene            1..660
                     /gene="cav1.L"
                     /gene_synonym="bscl3; Cav-1; cav1; cav1-a; cav1-b; cav1.S;
                     cav1a; cgl3; vip21"
                     /note="caveolin 1 L homeolog"
                     /db_xref="GeneID:398392"
                     /db_xref="Xenbase:XB-GENE-865922"
     CDS             1..660
                     /gene="cav1.L"
                     /gene_synonym="bscl3; Cav-1; cav1; cav1-a; cav1-b; cav1.S;
                     cav1a; cgl3; vip21"
                     /note="caveolin-1; caveolin 1, caveolae protein, 22kDa;
                     caveolin 1 S homeolog"
                     /codon_start=1
                     /product="caveolin 1 L homeolog"
                     /protein_id="NP_001082300.1"
                     /db_xref="GeneID:398392"
                     /db_xref="Xenbase:XB-GENE-865922"
                     /translation="
MGIILNAASCHSSHPIPIYGGTAALTVTCLFSPSLSPCPSRSLQGVLYTTPVIREHGNIYKPNNKTMADDFLTETEVRDSHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPDGTHSFDGIWKTSFTTFTVTKYWFYRLLSAIFGIPLSLIWGIFFAILSFLHIWAVVPCIRSYLIEIQFLSRVYSIGVHTLFDPWFEAMGKMLSFIKISLPQRSVGDYY"
     misc_feature    235..630
                     /gene="cav1.L"
                     /gene_synonym="bscl3; Cav-1; cav1; cav1-a; cav1-b; cav1.S;
                     cav1a; cgl3; vip21"
                     /note="Region: Caveolin; pfam01146"
                     /db_xref="CDD:460081"
ORIGIN      
atggggatcattctcaacgcagcttcgtgtcacagctctcaccctattcccatctatggtggcactgctgcgctaactgtcacttgtcttttctctccttcgctctctccttgtccgtcccgctccctccagggtgttctctacaccacgccggtcatcagagagcacggcaacatctacaaacccaacaacaagaccatggcagatgatttcctgactgagactgaagtccgcgactcgcacaccaaggagatcgatctggtcaacagggaccccaagcacctcaatgacgatgtggttaagatcgattttgaagacgtgattgctgaaccagatgggacacatagcttcgatggcatctggaaaacaagcttcactacattcactgtcacaaagtactggttctatcggctgctgtctgctatctttggcatcccattgtcacttatctggggcatcttctttgccatcctctccttcctgcacatctgggcagtggtgccatgcatacgaagctacttgattgagattcaatttcttagccgggtctattccatcggtgtccacaccttatttgacccgtggtttgaagccatgggcaaaatgctcagttttattaagatttccttaccgcaaagaagtgtaggtgactattactga
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]