2024-03-29 13:59:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001088485 1072 bp mRNA linear VRT 18-DEC-2022 DEFINITION Xenopus laevis VENT homeobox 3, gene 2 S homeolog (ventx3.2.S), mRNA. ACCESSION NM_001088485 NM_001088486 VERSION NM_001088485.1 KEYWORDS RefSeq. SOURCE Xenopus laevis (African clawed frog) ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus. REFERENCE 1 (bases 1 to 1072) AUTHORS Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and Richardson P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev Dyn 225 (4), 384-391 (2002) PUBMED 12454917 REFERENCE 2 (bases 1 to 1072) AUTHORS Shapira E, Marom1 K, Levy V, Yelin R and Fainsod A. TITLE The Xvex-1 antimorph reveals the temporal competence for organizer formation and an early role for ventral homeobox genes JOURNAL Mech Dev 90 (1), 77-87 (2000) PUBMED 10585564 REFERENCE 3 (bases 1 to 1072) AUTHORS Shapira E, Marom K, Yelin R, Levy A and Fainsod A. TITLE A role for the homeobox gene Xvex-1 as part of the BMP-4 ventral signaling pathway JOURNAL Mech Dev 86 (1-2), 99-111 (1999) PUBMED 10446269 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF149307.1. On Jul 25, 2007 this sequence version replaced NM_001088486.1. ##Evidence-Data-START## Transcript exon combination :: AF149307.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN04285340, SAMN04285342 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1072 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /chromosome="7S" /map="7S" gene 1..1072 /gene="ventx3.2.S" /gene_synonym="ventx3.2; vex-1; vex1; xvex-1" /note="VENT homeobox 3, gene 2 S homeolog" /db_xref="GeneID:398140" /db_xref="Xenbase:XB-GENE-864941" exon 1..307 /gene="ventx3.2.S" /gene_synonym="ventx3.2; vex-1; vex1; xvex-1" /inference="alignment:Splign:2.1.0" misc_feature 37..39 /gene="ventx3.2.S" /gene_synonym="ventx3.2; vex-1; vex1; xvex-1" /note="upstream in-frame stop codon" CDS 46..903 /gene="ventx3.2.S" /gene_synonym="ventx3.2; vex-1; vex1; xvex-1" /note="ventral homeobox 1; homeodomain transcription factor Xvex-1; ventral homeobox protein; homeodomain transcription factor vex-1" /codon_start=1 /product="homeobox protein vex1" /protein_id="NP_001081954.1" /db_xref="GeneID:398140" /db_xref="Xenbase:XB-GENE-864941" /translation="
MEKRPYSVEWLSESSQRKAVYSNADLLGYKSGNPDKESNISLPSRATGPTLPSVDYREKENYCVRNVQNEERSPPVKDQLHSQPAPQELDTSRRALMVVPACERSTDQGNKVTGTTDTNKKAKPVCDEDAAARARTKFSPEQLEELERSFKENRYIGSSEKRRLSKVLKLSETQIKTWFQNRRMKFKRQTQDARVDAFFSGLYVPYYGYPDLPTPGYSVQPEFSVLAPHTMAAPSLPFGPLQSTVISPGLHPTAIPSANLGSYPYSSMLVHPMLNEPKRQRYSPY"
misc_feature 133..207 /gene="ventx3.2.S" /gene_synonym="ventx3.2; vex-1; vex1; xvex-1" /note="propagated from UniProtKB/Swiss-Prot (Q9W769.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 250..309 /gene="ventx3.2.S" /gene_synonym="ventx3.2; vex-1; vex1; xvex-1" /note="propagated from UniProtKB/Swiss-Prot (Q9W769.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(442..453,457..459,508..510,526..528,565..567, 571..576,583..588,592..600,604..609) /gene="ventx3.2.S" /gene_synonym="ventx3.2; vex-1; vex1; xvex-1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(445..447,454..456,574..576,583..588,595..597) /gene="ventx3.2.S" /gene_synonym="ventx3.2; vex-1; vex1; xvex-1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 448..606 /gene="ventx3.2.S" /gene_synonym="ventx3.2; vex-1; vex1; xvex-1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 308..567 /gene="ventx3.2.S" /gene_synonym="ventx3.2; vex-1; vex1; xvex-1" /inference="alignment:Splign:2.1.0" exon 568..1061 /gene="ventx3.2.S" /gene_synonym="ventx3.2; vex-1; vex1; xvex-1" /inference="alignment:Splign:2.1.0" ORIGIN
agtttgtggcagtttgtgaaagaggaaacacaaagttgaaggactatggagaagagaccctactcagtagaatggctttcagagagcagtcagaggaaagctgtttattccaatgcggatctattaggatataaaagtggaaatccagacaaggaatccaatatctcattgccatcaagagctactggaccaacattgccatcggtggactacagagagaaggaaaattattgcgtgcggaatgtccaaaatgaagaaagaagcccacctgttaaagaccaactgcactcccagccagcaccacaagagcttgatacatctagaagagccttaatggtggttcctgcttgtgagcgaagcactgatcaaggaaataaggtcactggcacaactgacaccaacaagaaggccaaacctgtgtgtgatgaagatgctgctgccagagcccgcaccaaattctcccctgagcagctggaggagcttgaaaggagcttcaaggagaacagatacattggatccagtgagaaaagacggctgtccaaggtgctgaaactctctgagactcagattaaaacctggtttcagaatcgaaggatgaagttcaagcgtcaaacgcaggatgcaagggttgatgctttcttttcgggactttatgtgccttattatggttaccctgaccttccaactcctggatattcagtccagccggagttttctgttctggcccctcatacaatggcagctccatctcttccatttggtcctctacaatctactgttatttcacctggactccacccaacagctattccttctgcaaaccttggctcttatccctactcttccatgcttgtacacccaatgctgaacgagcctaaacgacaaagatacagcccatactaaagtttcacattgtatacattgttgaagcaccactgttattattgttatggacatttgcaattatttattataagttattacatgaaagcacagcagcacattcagacagagttttattagtattgggttttttaataataaagaaatctgttctgttgaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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