LOCUS       NM_001088485            1072 bp    mRNA    linear   VRT 03-APR-2024
DEFINITION  Xenopus laevis VENT homeobox 3, gene 2 S homeolog (ventx3.2.S),
            mRNA.
ACCESSION   NM_001088485 NM_001088486
VERSION     NM_001088485.1
KEYWORDS    RefSeq.
SOURCE      Xenopus laevis (African clawed frog)
  ORGANISM  Xenopus laevis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Xenopus.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Shapira,E., Marom1,K., Levy,V., Yelin,R. and Fainsod,A.
  TITLE     The Xvex-1 antimorph reveals the temporal competence for organizer
            formation and an early role for ventral homeobox genes
  JOURNAL   Mech Dev 90 (1), 77-87 (2000)
   PUBMED   10585564
REFERENCE   3  (bases 1 to 1072)
  AUTHORS   Shapira,E., Marom,K., Yelin,R., Levy,A. and Fainsod,A.
  TITLE     A role for the homeobox gene Xvex-1 as part of the BMP-4 ventral
            signaling pathway
  JOURNAL   Mech Dev 86 (1-2), 99-111 (1999)
   PUBMED   10446269
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF149307.1.
            
            On Jul 25, 2007 this sequence version replaced NM_001088486.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF149307.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN04285340, SAMN04285342
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Xenopus laevis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8355"
                     /chromosome="7S"
                     /map="7S"
     gene            1..1072
                     /gene="ventx3.2.S"
                     /gene_synonym="ventx3.2; vex-1; vex1; xvex-1"
                     /note="VENT homeobox 3, gene 2 S homeolog"
                     /db_xref="GeneID:398140"
                     /db_xref="Xenbase:XB-GENE-864941"
     exon            1..307
                     /gene="ventx3.2.S"
                     /gene_synonym="ventx3.2; vex-1; vex1; xvex-1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    37..39
                     /gene="ventx3.2.S"
                     /gene_synonym="ventx3.2; vex-1; vex1; xvex-1"
                     /note="upstream in-frame stop codon"
     CDS             46..903
                     /gene="ventx3.2.S"
                     /gene_synonym="ventx3.2; vex-1; vex1; xvex-1"
                     /note="ventral homeobox 1; homeodomain transcription
                     factor Xvex-1; ventral homeobox protein; homeodomain
                     transcription factor vex-1"
                     /codon_start=1
                     /product="homeobox protein vex1"
                     /protein_id="NP_001081954.1"
                     /db_xref="GeneID:398140"
                     /db_xref="Xenbase:XB-GENE-864941"
                     /translation="

MEKRPYSVEWLSESSQRKAVYSNADLLGYKSGNPDKESNISLPSRATGPTLPSVDYREKENYCVRNVQNEERSPPVKDQLHSQPAPQELDTSRRALMVVPACERSTDQGNKVTGTTDTNKKAKPVCDEDAAARARTKFSPEQLEELERSFKENRYIGSSEKRRLSKVLKLSETQIKTWFQNRRMKFKRQTQDARVDAFFSGLYVPYYGYPDLPTPGYSVQPEFSVLAPHTMAAPSLPFGPLQSTVISPGLHPTAIPSANLGSYPYSSMLVHPMLNEPKRQRYSPY"

     misc_feature    133..207
                     /gene="ventx3.2.S"
                     /gene_synonym="ventx3.2; vex-1; vex1; xvex-1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9W769.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    250..309
                     /gene="ventx3.2.S"
                     /gene_synonym="ventx3.2; vex-1; vex1; xvex-1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9W769.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    442..609
                     /gene="ventx3.2.S"
                     /gene_synonym="ventx3.2; vex-1; vex1; xvex-1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            308..567
                     /gene="ventx3.2.S"
                     /gene_synonym="ventx3.2; vex-1; vex1; xvex-1"
                     /inference="alignment:Splign:2.1.0"
     exon            568..1061
                     /gene="ventx3.2.S"
                     /gene_synonym="ventx3.2; vex-1; vex1; xvex-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agtttgtggcagtttgtgaaagaggaaacacaaagttgaaggactatggagaagagaccctactcagtagaatggctttcagagagcagtcagaggaaagctgtttattccaatgcggatctattaggatataaaagtggaaatccagacaaggaatccaatatctcattgccatcaagagctactggaccaacattgccatcggtggactacagagagaaggaaaattattgcgtgcggaatgtccaaaatgaagaaagaagcccacctgttaaagaccaactgcactcccagccagcaccacaagagcttgatacatctagaagagccttaatggtggttcctgcttgtgagcgaagcactgatcaaggaaataaggtcactggcacaactgacaccaacaagaaggccaaacctgtgtgtgatgaagatgctgctgccagagcccgcaccaaattctcccctgagcagctggaggagcttgaaaggagcttcaaggagaacagatacattggatccagtgagaaaagacggctgtccaaggtgctgaaactctctgagactcagattaaaacctggtttcagaatcgaaggatgaagttcaagcgtcaaacgcaggatgcaagggttgatgctttcttttcgggactttatgtgccttattatggttaccctgaccttccaactcctggatattcagtccagccggagttttctgttctggcccctcatacaatggcagctccatctcttccatttggtcctctacaatctactgttatttcacctggactccacccaacagctattccttctgcaaaccttggctcttatccctactcttccatgcttgtacacccaatgctgaacgagcctaaacgacaaagatacagcccatactaaagtttcacattgtatacattgttgaagcaccactgttattattgttatggacatttgcaattatttattataagttattacatgaaagcacagcagcacattcagacagagttttattagtattgggttttttaataataaagaaatctgttctgttgaaaaaaaaaaa

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