GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-07-15 05:35:31, GGRNA.v2 : RefSeq release 224 (May, 2024)

LOCUS       NM_001087439            1709 bp    mRNA    linear   VRT 04-FEB-2024
DEFINITION  Xenopus laevis vimentin L homeolog (vim.L), mRNA.
ACCESSION   NM_001087439
VERSION     NM_001087439.1
KEYWORDS    RefSeq.
SOURCE      Xenopus laevis (African clawed frog)
  ORGANISM  Xenopus laevis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Xenopus.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Herrmann,H., Fouquet,B. and Franke,W.W.
  TITLE     Expression of intermediate filament proteins during development of
            Xenopus laevis. I. cDNA clones encoding different forms of vimentin
  JOURNAL   Development 105 (2), 279-298 (1989)
   PUBMED   2806127
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC080051.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC080051.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00012418, SAMD00012419
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Xenopus laevis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8355"
                     /chromosome="6L"
                     /map="6L"
     gene            1..1709
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /note="vimentin L homeolog"
                     /db_xref="GeneID:386601"
                     /db_xref="Xenbase:XB-GENE-866225"
     exon            1..605
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..1440
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /note="vimentin 1"
                     /codon_start=1
                     /product="vimentin-1/2"
                     /protein_id="NP_001080908.1"
                     /db_xref="GeneID:386601"
                     /db_xref="Xenbase:XB-GENE-866225"
                     /translation="
MATTKSSYRRIFGGNPRSSSSGNRYATSSTRYTLGSAMRPSTSSSRMVYSTSSSPAVFKSSSVRLRSSLPPARMADSVDFALADAVNLEFKANRTNEKAEMIELNDRFANFIDKVRFLEQQNKILVAELEQLKGKGTSRIGDLYEEEMRELRRQLDQATNDKARVEVDRDNLADDLQRLREKLQDEMIQKEEAEGNLQSFRQDVDNASLARIDLERKVESLQEEIAFLKKLHDEEIRELQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVAAKNLSDAEEWYKSKFADLSEAANRNNDALRQAKQETSDFRRQIQTLTCEIDAMKGSNESYERQMREMEENFAIEAANYQDTIQRLQEEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPVHSFSTMSLRETNLDSHPAETHSKRTVLIKTVETRDGQVVNESSQHHDDFE"
     misc_feature    61..141
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /note="propagated from UniProtKB/Swiss-Prot (P24789.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    76..345
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:461414"
     misc_feature    328..435
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /note="propagated from UniProtKB/Swiss-Prot (P24789.1);
                     Region: Coil 1A"
     misc_feature    346..1272
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
     misc_feature    436..501
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /note="propagated from UniProtKB/Swiss-Prot (P24789.1);
                     Region: Linker 1"
     misc_feature    502..777
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /note="propagated from UniProtKB/Swiss-Prot (P24789.1);
                     Region: Coil 1B"
     misc_feature    778..846
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /note="propagated from UniProtKB/Swiss-Prot (P24789.1);
                     Region: Linker 12"
     misc_feature    847..1263
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /note="propagated from UniProtKB/Swiss-Prot (P24789.1);
                     Region: Coil 2"
     misc_feature    1093..1095
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /note="Stutter. /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (P24789.1); other site"
     misc_feature    1264..1437
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /note="propagated from UniProtKB/Swiss-Prot (P24789.1);
                     Region: Tail"
     exon            606..666
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /inference="alignment:Splign:2.1.0"
     exon            667..762
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /inference="alignment:Splign:2.1.0"
     exon            763..924
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /inference="alignment:Splign:2.1.0"
     exon            925..1050
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1271
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /inference="alignment:Splign:2.1.0"
     exon            1272..1315
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /inference="alignment:Splign:2.1.0"
     exon            1316..1398
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /inference="alignment:Splign:2.1.0"
     exon            1399..1694
                     /gene="vim.L"
                     /gene_synonym="vim; vim-a; vim-b; vim1; vim2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
ggtgaggtcaagggaagccgctcgcagataaactcaaggaattacaaaggaagcaccaacatggcaacaaccaagtcatcctacagaaggattttcgggggaaaccctaggtcgagctcctctggaaatcgctatgcgacctccagcactaggtacaccctgggcagtgccatgcgcccgagcaccagcagcagcagaatggtctattccacatcttcctcccccgcggtgttcaagtcgtcctcggtcagactgaggagcagcctccccccggccagaatggcagactccgtagacttcgccctggcagatgccgtcaacctcgagtttaaagccaacaggaccaacgagaaggcggagatgatcgagctcaacgacagattcgccaacttcatcgacaaggtgcgattcctggagcagcagaacaagatcctggtggcggagctggagcagctgaaagggaaaggcacatcacggataggggatctctatgaggaggagatgagggagctccgcagacaactggaccaagcgaccaacgacaaagcccgagtagaagtagacagggacaatctggccgatgatctccagcgactgagagaaaagcttcaagatgaaatgatccaaaaagaagaagcagaaggcaacctgcagtcattcagacaggatgtggacaatgcctctttggcacgcattgacttggagaggaaggttgagtccttacaagaggagattgctttcctaaagaaactccatgatgaggaaatccgagaacttcagcttcaaattcaggagtcacatatccaggttgacatggatgtgtcgaaaccagatctcactgctgccctacgtgatgttcgccagcagtatgagaatgtggctgctaaaaatctttcagatgccgaagaatggtacaagtctaagtttgctgacctgtcggaagctgctaatcgcaacaatgatgccctgcgtcaagctaagcaggagaccagtgacttccgcagacagatccagactctcacctgcgagattgatgcaatgaaaggatctaacgagtcttacgaacgccaaatgcgagaaatggaggagaactttgccattgaagctgctaactatcaggacactattcaacgcctgcaagaggagatccagaacatgaaggaggagatggctcggcacttgcgagagtaccaggatctgctcaatgttaagatggcccttgatattgagattgctacttacaggaaactcctggagggagaggagagcagaatttcccttcctgtacattccttttctacaatgagcctgagagaaaccaaccttgattctcacccagcggaaactcattccaagcgcactgtgctaatcaagactgtggagacaagagatggacaggttgttaatgaaagctctcagcaccacgatgactttgagtgaaattgcaatatccggaacataagagagaacctttgccagcaccgtaatactggtgtgttttaaactttgaagaaaaccagctttcaagtgccttttgcagtcaattggagagcgcaagatagggataagctagctgacagttaggagttagattgacagcccttgagaaggacagacagcgagcttccttctgtctagtttacagactgtaatagcaatgatcttgtgccgcaaaactgtttttacattcccaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]