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2024-03-29 18:08:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001086951            1827 bp    mRNA    linear   VRT 24-JUN-2020
DEFINITION  Xenopus laevis TGFB induced factor homeobox 1 S homeolog (tgif1.S),
            mRNA.
ACCESSION   NM_001086951
VERSION     NM_001086951.1
KEYWORDS    RefSeq.
SOURCE      Xenopus laevis (African clawed frog)
  ORGANISM  Xenopus laevis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Xenopus.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC044016.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC044016.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00012418, SAMD00012419
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Xenopus laevis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8355"
                     /chromosome="6S"
     gene            1..1827
                     /gene="tgif1.S"
                     /gene_synonym="tgif; tgif1"
                     /note="TGFB induced factor homeobox 1 S homeolog"
                     /db_xref="GeneID:380112"
                     /db_xref="Xenbase:XB-GENE-853028"
     exon            1..121
                     /gene="tgif1.S"
                     /gene_synonym="tgif; tgif1"
                     /inference="alignment:Splign:2.0.8"
     misc_feature    16..18
                     /gene="tgif1.S"
                     /gene_synonym="tgif; tgif1"
                     /note="upstream in-frame stop codon"
     CDS             106..924
                     /gene="tgif1.S"
                     /gene_synonym="tgif; tgif1"
                     /note="TGFB-induced factor (TALE family homeobox)"
                     /codon_start=1
                     /product="TGFB induced factor homeobox 1 S homeolog"
                     /protein_id="NP_001080420.1"
                     /db_xref="GeneID:380112"
                     /db_xref="Xenbase:XB-GENE-853028"
                     /translation="
MKAKKGLVPLSGSETEDDDGMDIPLDLSSTAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSRQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRKGAKISDVIQMDSPTGTKPYIPTIDENSFHFTSAGANQSSGKLLASKLSPPQSLLARPSVICHTTVTSLSDAPFNFTHVLNAGQIPEAQQTDANNFTETSILYHEDTSKSGQNTNAQSGLFNTPPPTPPDHNQDFSGFQLLVDVALKQAAEMELQAKLMA"
     misc_feature    208..384
                     /gene="tgif1.S"
                     /gene_synonym="tgif; tgif1"
                     /note="HOX; Region: Homeodomain"
     misc_feature    order(211..225,229..231,289..291,307..309,346..348,
                     352..357,364..369,373..381)
                     /gene="tgif1.S"
                     /gene_synonym="tgif; tgif1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(217..219,226..228,355..357,364..369,376..378)
                     /gene="tgif1.S"
                     /gene_synonym="tgif; tgif1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    265..381
                     /gene="tgif1.S"
                     /gene_synonym="tgif; tgif1"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            122..348
                     /gene="tgif1.S"
                     /gene_synonym="tgif; tgif1"
                     /inference="alignment:Splign:2.0.8"
     exon            349..1813
                     /gene="tgif1.S"
                     /gene_synonym="tgif; tgif1"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      
gagacgctgaagtgatagagctcagggcatcccgtgtgtctgtgcattgcctctcgcactaacgttctgcctctgagctgggatccccggcggccccgtgctacaatgaaagccaagaaaggcttagttccactatcaggcagtgagacagaggatgacgatggtatggatatcccactggatctttcttccactgctggctcagggaagaggaggagacgtggaaacttgcctaaggaatcggtgcagattctgcgggactggctctatgaacaccgctacaatgcctatccctctgagcaagagaaagcactcctgtcccgtcagacacatctctccacactacaggtttgcaattggttcatcaatgcgcgccgcagactgttgcctgatatgctaagaaaagacgggaaggaccctaatcagttcaccatttctcggaagggggccaagataagcgacgtgatccagatggattctccaacaggcacaaagccgtacattcccactatagacgagaactcctttcatttcacttcagcaggagccaatcagagctcagggaagttactggcctctaaactctctcctccacaatctctgctcgctcggccttctgtgatctgtcataccactgtaacgtcactaagtgacgcgcctttcaatttcacccatgtgttgaacgctggacaaatcccagaagcgcagcagaccgacgcaaacaacttcacagaaacctccattttgtaccacgaagacactagtaaatcgggacaaaacacaaatgcacagagtggacttttcaacactccacccccaactcccccagaccataaccaggatttcagtggctttcagttattggtggatgttgctctcaaacaggcggcagagatggagctgcaggctaaacttatggcctaacttttttttttttctcctaggagttagaaaaaactttcaaaaaacatttcttttggactgcccaggttgataacaaactgttcacattatctgaatctatatatttgtatttcttttttttctttagtacattttttttgtacaactgttcaagcggaatattcttatccaacagaagtcttaccttttttgagcttggactaatttgtcttaatcttcataagaactgtgactcaagttgactgttgaaagattctcagttgtcatttttttttttttaacgcaaagttgtcattggcttattcatgcagtgatctagtccaggggcgtccaacctacatccctctagttgctacaaattgtagctaggggggtgcaagtggttcatccatgagctagaggcagtactcaggggtgagggagatgctatatccacacacacacactgcatttcattcagataattataaagttagagctactgtagaaacaacattcttctaatgtttcttggtagataaatgtgagttgtttcccaagattgtgacttttttttttttggtacctttcacactgtgcaatatttagaaaaacaaactagaactttttatatcattccagagcaggaaatatgctctcaatactgtctacaactagattttctttttttttaattggtttctttttttccccccacaatgtaataaagtgttttgtttaaggtaatatacaaactgtgtttttgttacctgggaatggcattagaatactttgtaactggattctgttcccacctggaatattaactgctatgtaaagatttgtttccatgacctgtattatttttgtatacttttgtaatatagagaaataacaatggaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]