2024-03-29 18:08:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001086951 1827 bp mRNA linear VRT 24-JUN-2020 DEFINITION Xenopus laevis TGFB induced factor homeobox 1 S homeolog (tgif1.S), mRNA. ACCESSION NM_001086951 VERSION NM_001086951.1 KEYWORDS RefSeq. SOURCE Xenopus laevis (African clawed frog) ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus. REFERENCE 1 (bases 1 to 1827) AUTHORS Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and Richardson P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev. Dyn. 225 (4), 384-391 (2002) PUBMED 12454917 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC044016.1. ##Evidence-Data-START## Transcript exon combination :: BC044016.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00012418, SAMD00012419 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1827 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /chromosome="6S" gene 1..1827 /gene="tgif1.S" /gene_synonym="tgif; tgif1" /note="TGFB induced factor homeobox 1 S homeolog" /db_xref="GeneID:380112" /db_xref="Xenbase:XB-GENE-853028" exon 1..121 /gene="tgif1.S" /gene_synonym="tgif; tgif1" /inference="alignment:Splign:2.0.8" misc_feature 16..18 /gene="tgif1.S" /gene_synonym="tgif; tgif1" /note="upstream in-frame stop codon" CDS 106..924 /gene="tgif1.S" /gene_synonym="tgif; tgif1" /note="TGFB-induced factor (TALE family homeobox)" /codon_start=1 /product="TGFB induced factor homeobox 1 S homeolog" /protein_id="NP_001080420.1" /db_xref="GeneID:380112" /db_xref="Xenbase:XB-GENE-853028" /translation="
MKAKKGLVPLSGSETEDDDGMDIPLDLSSTAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSRQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRKGAKISDVIQMDSPTGTKPYIPTIDENSFHFTSAGANQSSGKLLASKLSPPQSLLARPSVICHTTVTSLSDAPFNFTHVLNAGQIPEAQQTDANNFTETSILYHEDTSKSGQNTNAQSGLFNTPPPTPPDHNQDFSGFQLLVDVALKQAAEMELQAKLMA"
misc_feature 208..384 /gene="tgif1.S" /gene_synonym="tgif; tgif1" /note="HOX; Region: Homeodomain" misc_feature order(211..225,229..231,289..291,307..309,346..348, 352..357,364..369,373..381) /gene="tgif1.S" /gene_synonym="tgif; tgif1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(217..219,226..228,355..357,364..369,376..378) /gene="tgif1.S" /gene_synonym="tgif; tgif1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 265..381 /gene="tgif1.S" /gene_synonym="tgif; tgif1" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 122..348 /gene="tgif1.S" /gene_synonym="tgif; tgif1" /inference="alignment:Splign:2.0.8" exon 349..1813 /gene="tgif1.S" /gene_synonym="tgif; tgif1" /inference="alignment:Splign:2.0.8" ORIGIN
gagacgctgaagtgatagagctcagggcatcccgtgtgtctgtgcattgcctctcgcactaacgttctgcctctgagctgggatccccggcggccccgtgctacaatgaaagccaagaaaggcttagttccactatcaggcagtgagacagaggatgacgatggtatggatatcccactggatctttcttccactgctggctcagggaagaggaggagacgtggaaacttgcctaaggaatcggtgcagattctgcgggactggctctatgaacaccgctacaatgcctatccctctgagcaagagaaagcactcctgtcccgtcagacacatctctccacactacaggtttgcaattggttcatcaatgcgcgccgcagactgttgcctgatatgctaagaaaagacgggaaggaccctaatcagttcaccatttctcggaagggggccaagataagcgacgtgatccagatggattctccaacaggcacaaagccgtacattcccactatagacgagaactcctttcatttcacttcagcaggagccaatcagagctcagggaagttactggcctctaaactctctcctccacaatctctgctcgctcggccttctgtgatctgtcataccactgtaacgtcactaagtgacgcgcctttcaatttcacccatgtgttgaacgctggacaaatcccagaagcgcagcagaccgacgcaaacaacttcacagaaacctccattttgtaccacgaagacactagtaaatcgggacaaaacacaaatgcacagagtggacttttcaacactccacccccaactcccccagaccataaccaggatttcagtggctttcagttattggtggatgttgctctcaaacaggcggcagagatggagctgcaggctaaacttatggcctaacttttttttttttctcctaggagttagaaaaaactttcaaaaaacatttcttttggactgcccaggttgataacaaactgttcacattatctgaatctatatatttgtatttcttttttttctttagtacattttttttgtacaactgttcaagcggaatattcttatccaacagaagtcttaccttttttgagcttggactaatttgtcttaatcttcataagaactgtgactcaagttgactgttgaaagattctcagttgtcatttttttttttttaacgcaaagttgtcattggcttattcatgcagtgatctagtccaggggcgtccaacctacatccctctagttgctacaaattgtagctaggggggtgcaagtggttcatccatgagctagaggcagtactcaggggtgagggagatgctatatccacacacacacactgcatttcattcagataattataaagttagagctactgtagaaacaacattcttctaatgtttcttggtagataaatgtgagttgtttcccaagattgtgacttttttttttttggtacctttcacactgtgcaatatttagaaaaacaaactagaactttttatatcattccagagcaggaaatatgctctcaatactgtctacaactagattttctttttttttaattggtttctttttttccccccacaatgtaataaagtgttttgtttaaggtaatatacaaactgtgtttttgttacctgggaatggcattagaatactttgtaactggattctgttcccacctggaatattaactgctatgtaaagatttgtttccatgacctgtattatttttgtatacttttgtaatatagagaaataacaatggaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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