LOCUS       NM_001085822            1837 bp    mRNA    linear   VRT 21-NOV-2021
DEFINITION  Xenopus laevis homeobox C5 L homeolog (hoxc5.L), mRNA.
ACCESSION   NM_001085822
VERSION     NM_001085822.1
KEYWORDS    RefSeq.
SOURCE      Xenopus laevis (African clawed frog)
  ORGANISM  Xenopus laevis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Xenopus.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
REFERENCE   2  (bases 1 to 1837)
  AUTHORS   Fritz A and De Robertis EM.
  TITLE     Xenopus homeobox-containing cDNAs expressed in early development
  JOURNAL   Nucleic Acids Res 16 (4), 1453-1469 (1988)
   PUBMED   2894634
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC124880.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC124880.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00012418, SAMN13737718
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Xenopus laevis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8355"
                     /chromosome="2L"
                     /map="2L"
     gene            1..1837
                     /gene="hoxc5.L"
                     /gene_synonym="hoxc5; hoxc5-A; XlHbox5"
                     /note="homeobox C5 L homeolog"
                     /db_xref="GeneID:378579"
                     /db_xref="Xenbase:XB-GENE-865541"
     exon            1..517
                     /gene="hoxc5.L"
                     /gene_synonym="hoxc5; hoxc5-A; XlHbox5"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    43..45
                     /gene="hoxc5.L"
                     /gene_synonym="hoxc5; hoxc5-A; XlHbox5"
                     /note="upstream in-frame stop codon"
     CDS             52..732
                     /gene="hoxc5.L"
                     /gene_synonym="hoxc5; hoxc5-A; XlHbox5"
                     /note="xlHbox-5"
                     /codon_start=1
                     /product="homeobox protein Hox-C5"
                     /protein_id="NP_001079291.1"
                     /db_xref="GeneID:378579"
                     /db_xref="Xenbase:XB-GENE-865541"
                     /translation="

MSSYVANSFYKQSQNVPAYSMQSYGNYGSVSEVPSSRYCYSGLDLSITFPSPGSSNSLSALDMPSNPTANPERPSCTVMGSSGHTVGRGEQSALNSGIYNQKAATTALEERSKGMESIKTEPAQSTPQGGQPQQQQQQQQPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDTKVKSKDSM"

     misc_feature    order(529..543,547..549,598..600,616..618,655..657,
                     661..666,673..678,682..690,694..699)
                     /gene="hoxc5.L"
                     /gene_synonym="hoxc5; hoxc5-A; XlHbox5"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    535..696
                     /gene="hoxc5.L"
                     /gene_synonym="hoxc5; hoxc5-A; XlHbox5"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(535..537,544..546,664..666,673..678,685..687)
                     /gene="hoxc5.L"
                     /gene_synonym="hoxc5; hoxc5-A; XlHbox5"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            518..1814
                     /gene="hoxc5.L"
                     /gene_synonym="hoxc5; hoxc5-A; XlHbox5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

caaagggtgcaaaaaaaaaaaaaaaacaactaataataacaataatcagccatgagttcgtacgtagccaattcattctataagcaaagtcaaaacgttccagcctattccatgcaaagttatgggaattatggatctgtatccgaggtcccttcatccaggtactgctacagtgggttggatctgagcattacattcccttctcctggttcttctaactctctgagcgctttggacatgccttcaaacccaactgctaaccctgagcggccctcctgcactgttatgggttcttctgggcacactgtgggaagaggagagcagagtgccctcaactctgggatttacaatcagaaagctgcgactacagcgctggaggagagatctaaagggatggagagcatcaaaactgagccggcacagagcactccacaaggtgggcaaccacagcagcaacagcagcagcagcagccaccacaaatatatccttggatgaccaaactgcacatgagccatgaaacggacgggaagcgttcccggacaagttacactcgataccagaccctggagctggagaaggaattccactttaatagatacctgactcgccgaaggcgcatagagatcgccaacaacctctgtctaaacgagaggcagatcaaaatttggttccagaaccgacggatgaaatggaagaaagacacaaaagtcaagagcaaagactccatgtaaaggagcagagaccggagaaggcagatatttaaccttagttttgttacttgatgaaactttctgcattttattttgtgtgaggggagaccaagggaagagaaggagtccacagggatccaaagtcatttgtaaggatctaaggccctaatgtaatatatagcgcccgttcatactctttttattccccaaacaaaatagtgtatagacctgtatcttgtcttatgtgttttgttttgaccaattttgttttaatgaaaaactctggaaaaaaatagtcttggcaactccctgctctatgtaatttcccgagcggcattgtattagacttgcaagctgtctggggtcaaagagagttcttttgggggagaaaatgctaattgagatctttaggctgaagagggcagggaaagtgtggctgtattatattgtgcttactataataggggtcatagatttaatggccggttagatatggaaatgtattaaaaaataaaaaaaaaaacaggggaagaggtttttaagttaaaacttctccattcgttccatcgaaatggaatagacccgagtctgtgtgtgtgtgtgtatacaatccacacattaatcctttcatgcacttgtaaagtcttttcatattatacacactataaagtgaatttgtttttcctgccatgttatgtttcagtagctgttgcttatgttacaaaaagaaaaaaaaaaacaccccagtttttgtgtatcataagttgattttgtccatatacttttgatattatttgttttggaagtgtttgtgtgctgattttattggcatgttggagaaacaaaaacgagcaaacttttttttattaggataaaaaaaaaggtttttaatgtgtaatttattttattttttatttctgcgtaagtaatgctaaaaaaaagcgtctaagaaacagtttgtacatcctcgttttaatataatcctttctagtcagttttatctgatcatgtaatgcatatatttattggttgtaatttcatatgtgaaaaaatcatggaacctatattttgtcatattgaataaacagcaagtaatataacaaaaaaaaaaaaaaaaaaaaaaaaa

//