2024-03-30 00:48:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001082710 3599 bp mRNA linear MAM 12-FEB-2023 DEFINITION Oryctolagus cuniculus argonaute RISC catalytic component 2 (AGO2), mRNA. ACCESSION NM_001082710 VERSION NM_001082710.1 KEYWORDS RefSeq. SOURCE Oryctolagus cuniculus (rabbit) ORGANISM Oryctolagus cuniculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus. REFERENCE 1 (bases 1 to 3599) AUTHORS Zou C, Zhang Z, Wu S and Osterman JC. TITLE Molecular cloning and characterization of a rabbit eIF2C protein JOURNAL Gene 211 (2), 187-194 (1998) PUBMED 9602122 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF005355.1. ##Evidence-Data-START## Transcript exon combination :: AF005355.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA5760392, SAMEA5760402 [ECO:0006172] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3599 /organism="Oryctolagus cuniculus" /mol_type="mRNA" /db_xref="taxon:9986" /chromosome="3" /map="3" gene 1..3599 /gene="AGO2" /gene_synonym="EIF2C2" /note="argonaute RISC catalytic component 2" /db_xref="GeneID:100009457" exon 1..158 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" CDS 82..2523 /gene="AGO2" /gene_synonym="EIF2C2" /EC_number="3.1.26.n2" /note="translation initiation factor eIF2C; eukaryotic translation initiation factor 2C, 2" /codon_start=1 /product="protein argonaute-2" /protein_id="NP_001076179.1" /db_xref="GeneID:100009457" /translation="
MDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKAQIFGDRKPVFDGRKNLYTAMPLPIGREKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVGPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 184..441 /gene="AGO2" /gene_synonym="EIF2C2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 469..621 /gene="AGO2" /gene_synonym="EIF2C2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 622..984 /gene="AGO2" /gene_synonym="EIF2C2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(778..780,823..825,865..867,877..879,931..933, 952..954,958..960) /gene="AGO2" /gene_synonym="EIF2C2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1117..2394 /gene="AGO2" /gene_synonym="EIF2C2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1528..1530,1540..1542,1576..1587,1594..1596, 1618..1620,1627..1629,1639..1641,1651..1653) /gene="AGO2" /gene_synonym="EIF2C2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1732..1734,1738..1740,1948..1950,2362..2364) /gene="AGO2" /gene_synonym="EIF2C2" /note="active site" /db_xref="CDD:240015" exon 159..279 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 280..461 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 462..598 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 599..733 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 734..821 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 822..969 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 970..1089 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 1090..1212 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 1213..1346 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 1347..1531 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 1532..1691 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 1692..1782 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 1783..1977 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 1978..2112 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 2113..2214 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 2215..2414 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" exon 2415..2796 /gene="AGO2" /gene_synonym="EIF2C2" /inference="alignment:Splign:2.1.0" ORIGIN
ggatatgccttcaagcctccgccgaggcccgactttgggacctccgggagaacaatcaagttgcaggccaatttcttcgagatggacatccccaaaattgacatctatcactatgaattggatatcaagcccgagaaatgccccaggagagtgaacagggagatagtagagcacatggtgcagcactttaaagcccagatcttcggcgaccggaagccggtgttcgacgggaggaagaacctgtacacggcgatgccgctgcccatcgggagggagaaggtggagctggaggtcacgctgccgggagaaggcaaggaccgcatcttcaaggtgtccatcaagtgggtgtcgtgcgtgagcctgcaggcgctgcacgacgcactttccgggcggctgcccagcgtcccgttcgagacgatccaggccctggacgtggtcatgaggcatttgccatccatgaggtacacgcctgtgggccgctccttcttcaccgcgtccgagggctgctccaaccctcttggcgggggccgggaagtgtggttcggcttccaccagtctgtccgaccttctctttggaaaatgatgctgaatattgacgtgtcagcgacggcattctacaaggcgcagccagtaatcgagtttgtgtgtgaagttctggattttaaaagcattgaagaacaacagaaacctctgacagattcccaaagggtcaagtttaccaaagaaatcaaaggtctgaaggtggagataacgcactgtgggcagatgaagaggaagtaccgcgtctgcaacgtgacccggcggcccgccagccaccagacgttccctctgcagcaagagagcgggcagacggtggagtgcacggtggcccagtacttcaaggacaggcacaagctggttctgcgctacccccacctcccgtgcctgcaagtgggacaggagcagaagcacacctaccttcccctggaggtctgcaacatagtggccggacagagatgtataaaaaaattaacggacaatcaaacctcaactatgatcagagcgaccgccaggtctgcgcccgatcggcaagaagagatcagcaagttgatgcgaagcgcgagcttcaacacagatccgtacgtccgcgagttcggaatcatggtgaaagacgagatgacggacgtgacggggcgggtcctgcagccgccctccatcctgtacgggggccggaataaggcgatcgccacgcccgtgcagggcgtgtgggacatgaggaacaagcagttccacacgggcatcgagatcaaggtgtgggccatcgcctgcttcgcgccccagcgccagtgcacggaagtccaccttaagtcctttacagagcagctgaggaagatctcgagagacgcgggcatgccgatccagggccagccgtgcttctgcaagtacgcgcagggggccgacagcgtggggcccatgttcagacacctgaagaacacgtacgccgggctgcagctggtggtggtgatcctgcccgggaagacgcccgtctacgctgaagtgaagcgcgtcggggacacggtgctgggcatggccacgcagtgcgtgcagatgaagaacgtgcagaggaccacgccgcagacgctgtccaacctctgcctgaagatcaacgtgaagctgggcggcgtgaacaacatcctgctcccgcagggcaggccccccgtgttccagcagccggtcatatttctgggtgcagatgtcactcacccacccgctggggatggcaagaagccctcgatcgctgccgtcgtgggcagcatggacgcccaccccaaccgctactgcgccaccgtgcgggtgcagcagcaccggcaggagatcatccaggacctggccgccatggtgcgcgagctgctcatccagttctacaagtccacgcgcttcaagcccacgcgcatcatcttctaccgcgacggcgtctccgagggccagttccagcaggttctccaccacgagctgctcgccatccgcgaggcctgcatcaagctggagaaggactaccagccggggatcaccttcatcgtggtgcagaagcggcaccacaccaggctcttctgcacggacaagaacgagcgggtcggcaagagcgggaacattccagcgggcacgaccgtggacacgaagatcacacacccgaccgagtttgacttctacctgtgcagccacgccggcatccaggggacaagcaggccctcccactaccacgtcttgtgggatgacaatcgcttctcttccgatgagctacagatcctgacctaccagctgtgtcacacctacgtgcgttgcacgcgctccgtctctatcccggcgccggcttactacgctcacctggtcgccttccgcgccaggtaccacctggtggacaaagaacacgacagcgctgaaggaagccatacctctgggcagagcaacgggcgagaccaccaggccctggccaaggccgtgcaggtccaccaggacacactgcgcaccatgtactttgcttgacgtgttttcgtgtccggcgattgtcacgtgagaccagccacactcagaccacagaggcccagccctccccgacagccagcaccgggcagccgaccggagacgccactggttttacccgattctccattttccagaatgccttccgtcccagatttcaacttggattttgaactgcaggcctgtatgagaccccaccgccgtaggaaatgtggtttgccaaaatctatgagctgctgattaaaagtagagtcccgtgtctcctaaaattctcctcccccgccctgccctcgagtcagttgcctggtggggcacagggctggtgccctgggggccgggccggtgttcagagggcctggtaggccgacgggcgtctccgggcgatgcagaaggccacgagcaccagagcgaggaggccgacgaggatcaggccgatgatgaggggcaccaagatggacgggtggtccgcggggcaggagaagctcggcccgaagatcccggtgcggggcagctgagcagcctggaccctcagcgagagcaggtcgaggtggagagctggggaaacagcgatgctggcgtttctgcagctgaagctctgccccagcggtgcttggagatctcgaagggacgcattctgggccgagaatgtccaccgtgctgcctgggggaaggacacgttgtactccacagccaggtagctcaggtagaccgcgctctggccctgccctgggtcctgcttgaatccaaagctgagctgtccataggggaaggagaggaagcactgatttcaccaagatgtctgtgatacatgtttcagttctgctgttgctgctacagctgagttgttgcttcagaactgggagctgtggaaaggtgctggtgtggcctgtggagtacagtcactggatgaatttaaatgtaatcctggatgaacttgtccggagaggtcatgaggtgattgttctgagaaattcagcttccattttcattgatccaagcaaacaagctaatattaaatttgaaacttttcctattgctgccaccaaagatgacctggaagatttttttgtacactttgt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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