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2024-03-30 00:48:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001082710            3599 bp    mRNA    linear   MAM 12-FEB-2023
DEFINITION  Oryctolagus cuniculus argonaute RISC catalytic component 2 (AGO2),
            mRNA.
ACCESSION   NM_001082710
VERSION     NM_001082710.1
KEYWORDS    RefSeq.
SOURCE      Oryctolagus cuniculus (rabbit)
  ORGANISM  Oryctolagus cuniculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha;
            Leporidae; Oryctolagus.
REFERENCE   1  (bases 1 to 3599)
  AUTHORS   Zou C, Zhang Z, Wu S and Osterman JC.
  TITLE     Molecular cloning and characterization of a rabbit eIF2C protein
  JOURNAL   Gene 211 (2), 187-194 (1998)
   PUBMED   9602122
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF005355.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF005355.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760392,
                                           SAMEA5760402 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3599
                     /organism="Oryctolagus cuniculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9986"
                     /chromosome="3"
                     /map="3"
     gene            1..3599
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /note="argonaute RISC catalytic component 2"
                     /db_xref="GeneID:100009457"
     exon            1..158
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..2523
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /EC_number="3.1.26.n2"
                     /note="translation initiation factor eIF2C; eukaryotic
                     translation initiation factor 2C, 2"
                     /codon_start=1
                     /product="protein argonaute-2"
                     /protein_id="NP_001076179.1"
                     /db_xref="GeneID:100009457"
                     /translation="
MDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKAQIFGDRKPVFDGRKNLYTAMPLPIGREKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVGPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
     misc_feature    184..441
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    469..621
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    622..984
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(778..780,823..825,865..867,877..879,931..933,
                     952..954,958..960)
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1117..2394
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1528..1530,1540..1542,1576..1587,1594..1596,
                     1618..1620,1627..1629,1639..1641,1651..1653)
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1732..1734,1738..1740,1948..1950,2362..2364)
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /note="active site"
                     /db_xref="CDD:240015"
     exon            159..279
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            280..461
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            462..598
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            599..733
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            734..821
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            822..969
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            970..1089
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            1090..1212
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            1213..1346
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            1347..1531
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            1532..1691
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            1692..1782
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            1783..1977
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            1978..2112
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            2113..2214
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            2215..2414
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
     exon            2415..2796
                     /gene="AGO2"
                     /gene_synonym="EIF2C2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
ggatatgccttcaagcctccgccgaggcccgactttgggacctccgggagaacaatcaagttgcaggccaatttcttcgagatggacatccccaaaattgacatctatcactatgaattggatatcaagcccgagaaatgccccaggagagtgaacagggagatagtagagcacatggtgcagcactttaaagcccagatcttcggcgaccggaagccggtgttcgacgggaggaagaacctgtacacggcgatgccgctgcccatcgggagggagaaggtggagctggaggtcacgctgccgggagaaggcaaggaccgcatcttcaaggtgtccatcaagtgggtgtcgtgcgtgagcctgcaggcgctgcacgacgcactttccgggcggctgcccagcgtcccgttcgagacgatccaggccctggacgtggtcatgaggcatttgccatccatgaggtacacgcctgtgggccgctccttcttcaccgcgtccgagggctgctccaaccctcttggcgggggccgggaagtgtggttcggcttccaccagtctgtccgaccttctctttggaaaatgatgctgaatattgacgtgtcagcgacggcattctacaaggcgcagccagtaatcgagtttgtgtgtgaagttctggattttaaaagcattgaagaacaacagaaacctctgacagattcccaaagggtcaagtttaccaaagaaatcaaaggtctgaaggtggagataacgcactgtgggcagatgaagaggaagtaccgcgtctgcaacgtgacccggcggcccgccagccaccagacgttccctctgcagcaagagagcgggcagacggtggagtgcacggtggcccagtacttcaaggacaggcacaagctggttctgcgctacccccacctcccgtgcctgcaagtgggacaggagcagaagcacacctaccttcccctggaggtctgcaacatagtggccggacagagatgtataaaaaaattaacggacaatcaaacctcaactatgatcagagcgaccgccaggtctgcgcccgatcggcaagaagagatcagcaagttgatgcgaagcgcgagcttcaacacagatccgtacgtccgcgagttcggaatcatggtgaaagacgagatgacggacgtgacggggcgggtcctgcagccgccctccatcctgtacgggggccggaataaggcgatcgccacgcccgtgcagggcgtgtgggacatgaggaacaagcagttccacacgggcatcgagatcaaggtgtgggccatcgcctgcttcgcgccccagcgccagtgcacggaagtccaccttaagtcctttacagagcagctgaggaagatctcgagagacgcgggcatgccgatccagggccagccgtgcttctgcaagtacgcgcagggggccgacagcgtggggcccatgttcagacacctgaagaacacgtacgccgggctgcagctggtggtggtgatcctgcccgggaagacgcccgtctacgctgaagtgaagcgcgtcggggacacggtgctgggcatggccacgcagtgcgtgcagatgaagaacgtgcagaggaccacgccgcagacgctgtccaacctctgcctgaagatcaacgtgaagctgggcggcgtgaacaacatcctgctcccgcagggcaggccccccgtgttccagcagccggtcatatttctgggtgcagatgtcactcacccacccgctggggatggcaagaagccctcgatcgctgccgtcgtgggcagcatggacgcccaccccaaccgctactgcgccaccgtgcgggtgcagcagcaccggcaggagatcatccaggacctggccgccatggtgcgcgagctgctcatccagttctacaagtccacgcgcttcaagcccacgcgcatcatcttctaccgcgacggcgtctccgagggccagttccagcaggttctccaccacgagctgctcgccatccgcgaggcctgcatcaagctggagaaggactaccagccggggatcaccttcatcgtggtgcagaagcggcaccacaccaggctcttctgcacggacaagaacgagcgggtcggcaagagcgggaacattccagcgggcacgaccgtggacacgaagatcacacacccgaccgagtttgacttctacctgtgcagccacgccggcatccaggggacaagcaggccctcccactaccacgtcttgtgggatgacaatcgcttctcttccgatgagctacagatcctgacctaccagctgtgtcacacctacgtgcgttgcacgcgctccgtctctatcccggcgccggcttactacgctcacctggtcgccttccgcgccaggtaccacctggtggacaaagaacacgacagcgctgaaggaagccatacctctgggcagagcaacgggcgagaccaccaggccctggccaaggccgtgcaggtccaccaggacacactgcgcaccatgtactttgcttgacgtgttttcgtgtccggcgattgtcacgtgagaccagccacactcagaccacagaggcccagccctccccgacagccagcaccgggcagccgaccggagacgccactggttttacccgattctccattttccagaatgccttccgtcccagatttcaacttggattttgaactgcaggcctgtatgagaccccaccgccgtaggaaatgtggtttgccaaaatctatgagctgctgattaaaagtagagtcccgtgtctcctaaaattctcctcccccgccctgccctcgagtcagttgcctggtggggcacagggctggtgccctgggggccgggccggtgttcagagggcctggtaggccgacgggcgtctccgggcgatgcagaaggccacgagcaccagagcgaggaggccgacgaggatcaggccgatgatgaggggcaccaagatggacgggtggtccgcggggcaggagaagctcggcccgaagatcccggtgcggggcagctgagcagcctggaccctcagcgagagcaggtcgaggtggagagctggggaaacagcgatgctggcgtttctgcagctgaagctctgccccagcggtgcttggagatctcgaagggacgcattctgggccgagaatgtccaccgtgctgcctgggggaaggacacgttgtactccacagccaggtagctcaggtagaccgcgctctggccctgccctgggtcctgcttgaatccaaagctgagctgtccataggggaaggagaggaagcactgatttcaccaagatgtctgtgatacatgtttcagttctgctgttgctgctacagctgagttgttgcttcagaactgggagctgtggaaaggtgctggtgtggcctgtggagtacagtcactggatgaatttaaatgtaatcctggatgaacttgtccggagaggtcatgaggtgattgttctgagaaattcagcttccattttcattgatccaagcaaacaagctaatattaaatttgaaacttttcctattgctgccaccaaagatgacctggaagatttttttgtacactttgt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]