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2024-03-29 23:10:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001079624            1109 bp    mRNA    linear   MAM 27-JUN-2020
DEFINITION  Bos taurus ESX homeobox 1 (ESX1), mRNA.
ACCESSION   NM_001079624 XM_868141
VERSION     NM_001079624.2
KEYWORDS    RefSeq.
SOURCE      Bos taurus (cattle)
  ORGANISM  Bos taurus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bos.
REFERENCE   1  (bases 1 to 1109)
  AUTHORS   Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D,
            Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G,
            Roberts M, Subramanian P, Yorke JA and Salzberg SL.
  TITLE     A whole-genome assembly of the domestic cow, Bos taurus
  JOURNAL   Genome Biol. 10 (4), R42 (2009)
   PUBMED   19393038
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC109512.1.
            
            On Aug 31, 2012 this sequence version replaced NM_001079624.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC109512.1, DT830770.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03145497 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1109              BC109512.1         3-1111
FEATURES             Location/Qualifiers
     source          1..1109
                     /organism="Bos taurus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9913"
                     /chromosome="X"
                     /map="X"
                     /breed="mixed"
     gene            1..1109
                     /gene="ESX1"
                     /note="ESX homeobox 1"
                     /db_xref="BGD:BT18272"
                     /db_xref="GeneID:616174"
                     /db_xref="VGNC:VGNC:28612"
     exon            1..143
                     /gene="ESX1"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..919
                     /gene="ESX1"
                     /note="extraembryonic, spermatogenesis, homeobox 1"
                     /codon_start=1
                     /product="homeobox protein ESX1"
                     /protein_id="NP_001073092.1"
                     /db_xref="BGD:BT18272"
                     /db_xref="GeneID:616174"
                     /db_xref="VGNC:VGNC:28612"
                     /translation="
MDSSHFDIGFHNLGIGEDERHDVEPTLISEVLNGVEDETRSSPEPGEAAAAAAANYFGEADSNLLDDENREGNENRAGDENRAGDENRAGDENREGNGGDIEPPPQQEEPGPQAVQGPQNAAVKPRRCRTVFTQLQLLELERVFRRVQYPDVFAREDIARRLNLAERRVQVWFQNRRAKWRRYQRALMFRNVHPAALGHPMGVFFNGPYHVFQPGWRYVPAVPRPGLPPGVPPPPVLPAPLPPRPWRMPFPQPVPVPHYAMAPVGLAWAPIGHFVGPRF"
     misc_feature    order(455..469,473..475,524..526,542..544,581..583,
                     587..592,599..604,608..616,620..625)
                     /gene="ESX1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(461..463,470..472,590..592,599..604,611..613)
                     /gene="ESX1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    464..622
                     /gene="ESX1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            144..543
                     /gene="ESX1"
                     /inference="alignment:Splign:2.1.0"
     exon            544..589
                     /gene="ESX1"
                     /inference="alignment:Splign:2.1.0"
     exon            590..1064
                     /gene="ESX1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
aactcgagcccagatcctcggatcgcctcacccccagcgcagagtctgcagaagcgcagtctttcatcgacagcaaagcatggacagcagccactttgacataggattccacaacttgggaatcggcgaggacgaacggcatgatgtggagcctaccctgatctcagaggttttaaacggagtggaagatgaaactcggtcctcacctgagcccggggaagcagccgcagccgcagccgcaaactactttggcgaggccgactccaacctcctggacgacgaaaaccgcgagggcaacgaaaaccgtgcgggcgacgaaaaccgtgcgggcgacgaaaaccgtgcgggcgacgaaaaccgtgagggcaacggcggcgatattgagcccccgccgcagcaggaggagccgggcccccaggccgtccaggggccccagaatgcggcagtaaagccgcgccgctgccgtaccgttttcacccagttgcagctgctggagctggaacgagttttccgccgcgttcagtaccccgacgtgtttgcacgagaggacattgcaagacgtctgaatttggctgaaagaagagtgcaggtttggtttcaaaaccgaagggccaaatggagaagataccagagggcattgatgtttagaaatgtgcaccctgctgccttgggccaccctatgggggtattctttaatgggccctatcatgtattccagcctggatggagatatgttcctgcagtgccacgtccaggcctgccccctggggtacccccaccacctgtgctgcccgcacctctgccacccaggccatggaggatgcctttcccacagccggtgcctgtgcctcactatgctatggcccctgtaggtttggcatgggcccctatcggtcattttgtaggcccccgtttctgaatatgttattcatgcagttttccaaagggtgtttctgctacatattagttgtgcacaaaaaataagaaacctgttaagtgtgtaaaatgagtgccagttgtttcgggagggcacatgacgtttccaataaagataaaataaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]