2024-03-29 23:10:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001079624 1109 bp mRNA linear MAM 27-JUN-2020 DEFINITION Bos taurus ESX homeobox 1 (ESX1), mRNA. ACCESSION NM_001079624 XM_868141 VERSION NM_001079624.2 KEYWORDS RefSeq. SOURCE Bos taurus (cattle) ORGANISM Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE 1 (bases 1 to 1109) AUTHORS Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G, Roberts M, Subramanian P, Yorke JA and Salzberg SL. TITLE A whole-genome assembly of the domestic cow, Bos taurus JOURNAL Genome Biol. 10 (4), R42 (2009) PUBMED 19393038 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC109512.1. On Aug 31, 2012 this sequence version replaced NM_001079624.1. ##Evidence-Data-START## Transcript exon combination :: BC109512.1, DT830770.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03145497 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1109 BC109512.1 3-1111 FEATURES Location/Qualifiers source 1..1109 /organism="Bos taurus" /mol_type="mRNA" /db_xref="taxon:9913" /chromosome="X" /map="X" /breed="mixed" gene 1..1109 /gene="ESX1" /note="ESX homeobox 1" /db_xref="BGD:BT18272" /db_xref="GeneID:616174" /db_xref="VGNC:VGNC:28612" exon 1..143 /gene="ESX1" /inference="alignment:Splign:2.1.0" CDS 80..919 /gene="ESX1" /note="extraembryonic, spermatogenesis, homeobox 1" /codon_start=1 /product="homeobox protein ESX1" /protein_id="NP_001073092.1" /db_xref="BGD:BT18272" /db_xref="GeneID:616174" /db_xref="VGNC:VGNC:28612" /translation="
MDSSHFDIGFHNLGIGEDERHDVEPTLISEVLNGVEDETRSSPEPGEAAAAAAANYFGEADSNLLDDENREGNENRAGDENRAGDENRAGDENREGNGGDIEPPPQQEEPGPQAVQGPQNAAVKPRRCRTVFTQLQLLELERVFRRVQYPDVFAREDIARRLNLAERRVQVWFQNRRAKWRRYQRALMFRNVHPAALGHPMGVFFNGPYHVFQPGWRYVPAVPRPGLPPGVPPPPVLPAPLPPRPWRMPFPQPVPVPHYAMAPVGLAWAPIGHFVGPRF"
misc_feature order(455..469,473..475,524..526,542..544,581..583, 587..592,599..604,608..616,620..625) /gene="ESX1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(461..463,470..472,590..592,599..604,611..613) /gene="ESX1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 464..622 /gene="ESX1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 144..543 /gene="ESX1" /inference="alignment:Splign:2.1.0" exon 544..589 /gene="ESX1" /inference="alignment:Splign:2.1.0" exon 590..1064 /gene="ESX1" /inference="alignment:Splign:2.1.0" ORIGIN
aactcgagcccagatcctcggatcgcctcacccccagcgcagagtctgcagaagcgcagtctttcatcgacagcaaagcatggacagcagccactttgacataggattccacaacttgggaatcggcgaggacgaacggcatgatgtggagcctaccctgatctcagaggttttaaacggagtggaagatgaaactcggtcctcacctgagcccggggaagcagccgcagccgcagccgcaaactactttggcgaggccgactccaacctcctggacgacgaaaaccgcgagggcaacgaaaaccgtgcgggcgacgaaaaccgtgcgggcgacgaaaaccgtgcgggcgacgaaaaccgtgagggcaacggcggcgatattgagcccccgccgcagcaggaggagccgggcccccaggccgtccaggggccccagaatgcggcagtaaagccgcgccgctgccgtaccgttttcacccagttgcagctgctggagctggaacgagttttccgccgcgttcagtaccccgacgtgtttgcacgagaggacattgcaagacgtctgaatttggctgaaagaagagtgcaggtttggtttcaaaaccgaagggccaaatggagaagataccagagggcattgatgtttagaaatgtgcaccctgctgccttgggccaccctatgggggtattctttaatgggccctatcatgtattccagcctggatggagatatgttcctgcagtgccacgtccaggcctgccccctggggtacccccaccacctgtgctgcccgcacctctgccacccaggccatggaggatgcctttcccacagccggtgcctgtgcctcactatgctatggcccctgtaggtttggcatgggcccctatcggtcattttgtaggcccccgtttctgaatatgttattcatgcagttttccaaagggtgtttctgctacatattagttgtgcacaaaaaataagaaacctgttaagtgtgtaaaatgagtgccagttgtttcgggagggcacatgacgtttccaataaagataaaataaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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