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2020-04-07 23:05:36, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       NM_001079361            2200 bp    mRNA    linear   VRT 26-DEC-2019
DEFINITION  Xenopus tropicalis H6 family homeobox 3 (hmx3), mRNA.
ACCESSION   NM_001079361
VERSION     NM_001079361.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2200)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC121874.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC121874.1, CR584577.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00862007, SAMN00862015
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="7"
                     /map="7"
     gene            1..2200
                     /gene="hmx3"
                     /gene_synonym="nkx-5.1; nkx5-1; nkx5.1"
                     /note="H6 family homeobox 3"
                     /db_xref="GeneID:780290"
                     /db_xref="Xenbase:XB-GENE-483776"
     exon            1..523
                     /gene="hmx3"
                     /gene_synonym="nkx-5.1; nkx5-1; nkx5.1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    202..204
                     /gene="hmx3"
                     /gene_synonym="nkx-5.1; nkx5-1; nkx5.1"
                     /note="upstream in-frame stop codon"
     CDS             223..1143
                     /gene="hmx3"
                     /gene_synonym="nkx-5.1; nkx5-1; nkx5.1"
                     /note="homeobox (H6 family) 3; homeobox protein Nkx-5.1;
                     homeobox protein H6 family member 3"
                     /codon_start=1
                     /product="homeobox protein HMX3"
                     /protein_id="NP_001072829.1"
                     /db_xref="GeneID:780290"
                     /db_xref="Xenbase:XB-GENE-483776"
                     /translation="
MPETGQESSNPPAKESPFSIKSLLTCEPSRAVRPHKALFTPIKGALDGAAFALSPLTDLTFPRLEIPAQRFALPAHYLERSPAWWYSYTLAHGGHTPRTEVPDKSLLLGPTSPVSGGERDSPEPIHPLKAELEAKDSESKSPEEIILEESEPEEGKKDDSGEDWKKREESPDKKPCRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHENSSSAESASSAANVPVSQPLLTFPHPVYYSHPVVTSVPLLRPV"
     misc_feature    order(757..771,775..777,826..828,844..846,883..885,
                     889..894,901..906,910..918,922..927)
                     /gene="hmx3"
                     /gene_synonym="nkx-5.1; nkx5-1; nkx5.1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    763..924
                     /gene="hmx3"
                     /gene_synonym="nkx-5.1; nkx5-1; nkx5.1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:306543"
     misc_feature    order(763..765,772..774,892..894,901..906,913..915)
                     /gene="hmx3"
                     /gene_synonym="nkx-5.1; nkx5-1; nkx5.1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            524..2186
                     /gene="hmx3"
                     /gene_synonym="nkx-5.1; nkx5-1; nkx5.1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
cagtctgcaggtagtggctgctgttccctgggtggctctttagcttggctacttggccctgctcttctctggccccacaaatgttggcttaggagtcgtaggagcacttccccggctttcctctgcgctctctctccctccaccccaggattcttggggggatcccctgcaagggtctgacaccttccatctggttgatgctaagatctgcccagagccatcatgcctgagacaggacaggagagcagcaaccctccggccaaggagtcccccttctctatcaagagccttctcacctgtgagcccagcagggcggtgcgaccccacaaagctctcttcacccccattaaaggggccctggacggggcagcgtttgccctctccccattgacagacttgacttttcctcggctggagatcccggcgcaaaggttcgccctcccggctcattacttggagagatccccggcctggtggtactcctacaccctggcacacggagggcacacgccgaggactgaagtgccagacaagagccttctgctgggccccacatcccctgtgtctgggggcgagagggactccccagagccgatccatcccctcaaagcagagttggaggccaaggacagcgagtccaagagcccggaggagattatcctggaggaaagtgagcctgaggaaggcaagaaggacgacagcggggaggactggaagaaaagggaggagagcccagacaagaaaccctgtaggaagaagaagactcggacagtgttctcccggagtcaggtcttccagctggagtccacctttgacatgaagaggtatctcagcagttcggagagggcaggcttagcggcctccctgcacctcacagagacccaagtaaagatctggttccagaaccgcaggaacaagtggaaaaggcaactggcggcagaactggaggctgctaacttgagccatgcagccgcccagcggatcgtcagggtgcccatcttgtaccatgaaaactcatccagcgcagagagtgctagctctgctgccaacgtgcccgtcagccagcccctcctgactttcccccacccagtgtattactcccacccagtggtcacatcagtacctttgctcaggccagtgtgagctcttctacccccccatcctcattggcaccgggcaccagggtaaggggcaccctccaaccccagctctggccgaaggggcacaggacactcccaaagtgtttgtaagtactgaagactggcaagccccaggctacagggcggggtcagagtagatccaaaaaaaggacacaaaatagataaataaaaatacagatttctgttttgtaaaggtgaataaagcgcacagatttgggacaagttcattcaaattgggtgacgttcaatttgccaaaatatttatccaacacgaactggttctgtttcacacttctctccattctcatctgttcaactgaacattttctccggaaaaaaaaaaaactatttctatatttgtttttctttttctcgattttgtaaattttgtttgtcagcatttcagccccaattcccccccccccctgttatttattcattccatggttttttttttacccttccacacgatggactatttaacttggaaaagactgtacatttttaattgcatattttgttttgttttttttgtaatataattattggattgtgcaatacgaacgggtagttgtttatttaatcccctcatcagcaacattgacttggtaaaaatgtgagggtaaataataaaacaaaagtacaatttttcaaaacaccacgatggtatgagaaaatataacatttaattataagcaaagcaccattagtgggaaaggctgatgcccaaggcagagagaatggcgctaaaatcagctcaaatgatgtgtatagttcaacgctttgatataagggacaatcaatgatgtaatttaagttattttgtaaatgtaaaagtttccctcaattgcaagaggtggaagtttgggcacccgaacgcggtgggaacagacccttgtgtatagcagatccgcagtctcctttacacaacgcagtctctttttttaaaaaaataaataaaagcgacaaaatatatttgttaaataaatgtttgttgtgaaaacgaaataaaatacactttacttaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]