LOCUS       NM_001032642            1419 bp    mRNA    linear   VRT 25-JUN-2020
DEFINITION  Takifugu rubripes paired homeobox protein (pox1), mRNA.
ACCESSION   NM_001032642
VERSION     NM_001032642.1
KEYWORDS    RefSeq.
SOURCE      Takifugu rubripes (Fugu rubripes)
  ORGANISM  Takifugu rubripes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea;
            Tetraodontidae; Takifugu.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY071923.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY071923.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1419
                     /organism="Takifugu rubripes"
                     /mol_type="mRNA"
                     /db_xref="taxon:31033"
                     /chromosome="20"
                     /map="20"
     gene            1..1419
                     /gene="pox1"
                     /note="paired homeobox protein"
                     /db_xref="GeneID:445985"
     exon            1..168
                     /gene="pox1"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..1157
                     /gene="pox1"
                     /note="Pox1; homeodomain"
                     /codon_start=1
                     /product="paired homeobox protein"
                     /protein_id="NP_001027814.1"
                     /db_xref="GeneID:445985"
                     /translation="

MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAAGAPEGSTPDESKTDATGGSAAAAASLPEAHTPPPPSSSSSCHSEARTQPQPGETSVEVNVTSPEPSDSESAAEDNADREEDGMREEARGKTQGDGGVQVDRNSPSCKQLNPSSAAQPAGLAQSNSYASSPLSLFRLQEQFRQHMAATNNLVHYPSFDIGAPSSLPYLGMNVNMPSPLGSLPCQSYYQTLSQAQQVWNSPLLQAAPGGLPGSLNSKTTSIENLRLRAKQHAASLGLDTLPN"

     misc_feature    order(213..227,231..233,282..284,300..302,339..341,
                     345..350,357..362,366..374,378..383)
                     /gene="pox1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    219..380
                     /gene="pox1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(219..221,228..230,348..350,357..362,369..371)
                     /gene="pox1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1077..1127
                     /gene="pox1"
                     /note="OAR domain; Region: OAR; pfam03826"
                     /db_xref="CDD:427530"
     exon            169..347
                     /gene="pox1"
                     /inference="alignment:Splign:2.1.0"
     exon            348..774
                     /gene="pox1"
                     /inference="alignment:Splign:2.1.0"
     exon            775..1419
                     /gene="pox1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ccaggccggcagtcatgcagcactacggggtaaacggctactctctccacgccatgaattcactcagcgcgatgtataacctccaccagcaggcggcgcagcaggcgcagcacgcacctgactacaggccctcggtgcacgccctcaccctggcagagagacttgctgacattatccttgaggcccgctatggctcccagcaccgaaagcagcgccgcagtcggacggccttcactgcgcagcagctggaggccctggagaagactttccagaagacccactaccctgacgtggtgatgcgcgagcgcctggccatgtgcaccaacctgcccgaagcacgagtgcaggtctggttcaagaaccggcgggccaagtttcgcaaaaagcagaggagcctgcagaaggagcagcttcagaagcagaaggaggcagccggagcgccggaggggtcgacgccggacgagtccaagacggacgccaccggcggcagcgctgctgcggccgcctcgctccctgaagcacacactcctccgcctccttcctcctcctcctcctgccactcagaagcccgcacgcagccccagcctggggagacgagcgtggaggtcaacgtcacctcccccgaaccgtccgacagcgagtcggcagcggaggacaacgcggacagagaggaggacggaatgagagaggaggccagagggaagacgcagggggacggcggagtccaagtggacaggaactccccgtcgtgcaaacagctgaacccttcatcggcagcgcagccagccgggctagcacagagcaactcctacgcctcgtctcccctcagccttttccgcctgcaggagcagtttcgccagcacatggccgccaccaacaacctggtgcactacccctccttcgacatcggcgccccgtcctctttgccctacctgggtatgaacgtgaacatgccgtccccgctggggtcgctgccctgccagtcctactatcagaccctgtcgcaggcccagcaggtgtggaacagtccgctcctgcaggcagcgccgggcggcctcccggggagcctcaacagcaagaccaccagcatcgagaacctccgtctgagggccaagcagcacgcagcatcgctgggattggacacactgcccaactgaagcgtgggccgcccggcgagcgtgctcaccctccggtcagagcctcgtgtagacgacaggccgcggcaaaactttggttttctctcctcacaactgacctcacaaggccgctcgctccaaacacacaaactgtctccccattagcctgtggtaaatgattgtgtctgcttcttgtaatttatttttcttaaaaaaaaagagagagagagagagaatgacatcttacttgcagattatttaaattttaataaaaccaacagca

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