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2019-03-23 03:51:35, GGRNA.v2 : RefSeq release 92 (Jan, 2019)

LOCUS       NM_001024874             829 bp    mRNA    linear   ROD 25-JUL-2018
DEFINITION  Rattus norvegicus reproductive homeobox 9 (Rhox9), mRNA.
ACCESSION   NM_001024874 XM_216470
VERSION     NM_001024874.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ058656.1.
            On Jun 17, 2005 this sequence version replaced XM_216470.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ058656.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="X"
     gene            1..829
                     /gene="Rhox9"
                     /note="reproductive homeobox 9"
                     /db_xref="GeneID:298352"
                     /db_xref="RGD:1563844"
     exon            1..90
                     /gene="Rhox9"
                     /inference="alignment:Splign:2.0.8"
     CDS             9..692
                     /gene="Rhox9"
                     /note="reproductive homeobox on X chromosome, 9; Rhox
                     homeobox family member 9"
                     /codon_start=1
                     /product="reproductive homeobox 9"
                     /protein_id="NP_001020045.1"
                     /db_xref="GeneID:298352"
                     /db_xref="RGD:1563844"
                     /translation="
MDTPQDSCQSFQKSLSLGAEVDPEQQHGGTAVVSEAREVGDQSQRLVGGLVQGGLDQGQPTQGQLAGGNLPQEEPAELSLAQEATGVEEEGDEKEEEMEARYAGDGAYGPEDNNVQQEGDQHPNDQEQPQQEAAIPEGNRGQQAGNRLVHPRHTRPRFTHSQLRDLERLFQETRYPSLRTRKDLARWMGVPESDVQDWFRMRRSLFRRNSRLLMFCELPPIPENNPS"
     misc_feature    order(462..476,480..482,531..533,549..551,588..590,
                     594..599,606..611,615..623,627..632)
                     /gene="Rhox9"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    468..629
                     /gene="Rhox9"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:278475"
     misc_feature    order(468..470,477..479,597..599,606..611,618..620)
                     /gene="Rhox9"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            91..550
                     /gene="Rhox9"
                     /inference="alignment:Splign:2.0.8"
     exon            551..597
                     /gene="Rhox9"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      
ttttcgccatggacactcctcaagacagctgccaaagtttccaaaagtctctgagtctgggagctgaggtggacccggagcaacagcatggtgggactgcagtggtctcagaggctagagaggtaggagaccaatcacagcgtttagtgggcgggcttgttcagggtgggcttgatcagggccaacccacgcagggccagttggctggaggcaaccttcctcaagaagagcctgctgagctcagtctcgctcaggaagccacaggagtagaagaggagggagacgagaaggaagaagaaatggaagcaagatatgctggtgatggtgcttacggccccgaggacaacaacgtccagcaagaaggtgaccaacaccccaatgatcaagagcagcctcagcaagaggcagccattcctgagggcaacaggggccaacaggctgggaaccggctggttcacccgcggcacactcgccccaggttcacccactctcagctgcgtgatctggagcgcctgttccaagagactcgctaccccagcttgcgaacaaggaaggaccttgcacgatggatgggtgtgccagaatctgatgtgcaggattggttccggatgagaagatctcttttccgcagaaacagcagactgctgatgttctgtgaacttccaccaattcctgagaacaacccttcttaaagattttggagcagcacttgagtgccacccctgtcccagagccacatgaggaaggcttcttctgagccacccataatggccatgactacctttacttccctacagttatttgagcaataaagacgtggattctaagt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]