LOCUS       NM_001006786            2285 bp    mRNA    linear   VRT 14-OCT-2022
DEFINITION  Xenopus tropicalis homeobox C8 (hoxc8), mRNA.
ACCESSION   NM_001006786
VERSION     NM_001006786.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2285)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2285)
  AUTHORS   Rana AA, Collart C, Gilchrist MJ and Smith JC.
  TITLE     Defining synphenotype groups in Xenopus tropicalis by use of
            antisense morpholino oligonucleotides
  JOURNAL   PLoS Genet 2 (11), e193 (2006)
   PUBMED   17112317
REFERENCE   3  (bases 1 to 2285)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC075597.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC075597.1, AL790622.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028296, SAMN00861989
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2285
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="2"
                     /map="2"
     gene            1..2285
                     /gene="hoxc8"
                     /gene_synonym="hox3; hox3a; hoxc-8; xhoxc8"
                     /note="homeobox C8"
                     /db_xref="GeneID:448482"
                     /db_xref="Xenbase:XB-GENE-480999"
     exon            1..811
                     /gene="hoxc8"
                     /gene_synonym="hox3; hox3a; hoxc-8; xhoxc8"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    184..186
                     /gene="hoxc8"
                     /gene_synonym="hox3; hox3a; hoxc-8; xhoxc8"
                     /note="upstream in-frame stop codon"
     CDS             376..1104
                     /gene="hoxc8"
                     /gene_synonym="hox3; hox3a; hoxc-8; xhoxc8"
                     /note="homeo box C8"
                     /codon_start=1
                     /product="homeobox protein Hox-C8"
                     /protein_id="NP_001006787.1"
                     /db_xref="GeneID:448482"
                     /db_xref="Xenbase:XB-GENE-480999"
                     /translation="

MSSYFVNPLFSKYKGGESLEPTYYDCRFPQSVSRSHALVYGPSATAPGFQHPSHHVQEFFHHGSSSLSNSGFQQNPCALTCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSSNTNTSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGARDEEKTEEEGNEEEEKEEEESKESKE"

     misc_feature    order(823..837,841..843,892..894,910..912,949..951,
                     955..960,967..972,976..984,988..993)
                     /gene="hoxc8"
                     /gene_synonym="hox3; hox3a; hoxc-8; xhoxc8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(829..831,838..840,958..960,967..972,979..981)
                     /gene="hoxc8"
                     /gene_synonym="hox3; hox3a; hoxc-8; xhoxc8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    832..990
                     /gene="hoxc8"
                     /gene_synonym="hox3; hox3a; hoxc-8; xhoxc8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            812..2274
                     /gene="hoxc8"
                     /gene_synonym="hox3; hox3a; hoxc-8; xhoxc8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ccggagaggattgatggatacaaatcgcgtgtgaaagcttcaccagcgggattttaaggaatttgcctgtggtgttaagggaaggagcagtaaaggagagagaaattgcgatagagctctacctaccgactgatcggaaagcaagcagcccagagacttgagcagcctcacactcaggcaccatgacacgtctgtgagagccaccaaacagccccccctccccgatctgatcccacaaaatcccccaaacaaacccaaacccaggggactcggttcccccgatctgcgcgattttgcccgcttttgcctttctgctctcatctattccgcattagtaaggagggggtgtcgctttctgccttacatgcaagaaccatgagctcctattttgtaaaccctctcttctccaagtacaaaggcggcgagtccttggaaccaacttactacgactgtcgcttcccacaaagtgtcagccggagccacgcattggtgtacggtccgagtgccacggctccaggcttccagcacccctctcaccatgtgcaggagttcttccaccatggcagctccagcctctccaattccggattccagcagaacccctgcgccctgacctgccacggagacgcctccaaattctatgggtacgaagcgctgcccaggcagtccctttatggtgcccagcaagaggcaagcgtggtgcagtaccccgactgtaaatcgtcctccaacactaacactagcgaaggacaaggccatttaaatcaaaattcgtctcccagcctcatgttcccatggatgagacctcacgcccccggaaggagaagcggcaggcagacgtacagccggtaccaaaccctggagctggagaaggaatttctcttcaatccttacttgactcggaagcgccggatcgaggtctcccatgccctgggactgactgagaggcaggtgaagatttggtttcaaaacaggaggatgaaatggaaaaaagagaataacaaggataagctaccgggggcccgggatgaagagaaaacagaggaggaaggcaacgaggaagaggagaaagaagaagaggagagcaaggagagcaaggaataagctgagtgtgagggctttgtgtgtgtttgagtgaatgtcactttcctcccggaaatctcgttttatggtagatgtaaaaccaagacgtttatgactctcatttgcttttatagagtatagaacggggaaacacaacagtaactacctgtcacaaactccagcctttctctctggtcaggactccactttgcattttgttgtgtgataaagggacatttgcattaactccttatttatgtcctccaggtcctgagacttaggctagtaacttaaacacaaagagatcatactgtgactttagtatggtttccgacagactgtcatttctctacagccagaatagtattaattccttttatgtgaaatttaaactacctattcacttttggagggacacgattttgtggcctcagaattgtagtatgtgttttatttagacgtgtgtattcatgtatgcggggggaggggccagtatttaccagagttattttcattttgttttattttctttatgtcctcattaagtatcgttgttatacggctcactgtacatttgaaactgtcgagttgaacttatcagcagggagcatttcgtgcacttctctgaacatggggcagttaacttaggtaaaataattaacatttccacaatctttgtgacaggcccaatcatcccaggtgtcaatggcattttatgtccctgcgcccagttacttacgagtttcataatgttgtgtgagcacttaaatcctccacctactacctaaagggatcaggcaataatcattttactaataacaactacaggatttatagatcctactactactcggtcaggcttttttcggtgtccatgctttagccatgtgtaagctaccgagtagctgtacatacgaaccgaggcttataatctaccttatcactacctatagaaggagatatgcttttgggaagtatttgtaacgcgtttttcgttgtctgtcgttgcttttttgcccaacaactaaaactgcctagttggacgcacatttttgtgtcacttttattgtgcttataaggtagcttagaactaaattgcactgaatgtaaagttatctattgtcttgatcttatctgttaatgcaagagcttgagatattaaaaaaagtaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaa

//