ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2026-04-25 22:29:44, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XR_013521466 3491 bp RNA linear PRI 01-JAN-2026
DEFINITION PREDICTED: Callithrix jacchus NRDE-2, necessary for RNA
interference, domain containing (NRDE2), transcript variant X4,
misc_RNA.
ACCESSION XR_013521466
VERSION XR_013521466.1
DBLINK BioProject: PRJNA1262967
KEYWORDS RefSeq.
SOURCE Callithrix jacchus (white-tufted-ear marmoset)
ORGANISM Callithrix jacchus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_133509) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_049354715.1-RS_2025_12
Annotation Pipeline :: NCBI Eukaryotic Genome Annotation
Pipeline (EGAP)
Annotation Software Version :: 10.5
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 12/15/2025
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3491
/organism="Callithrix jacchus"
/mol_type="transcribed RNA"
/isolate="240"
/db_xref="taxon:9483"
/chromosome="8"
/sex="male"
/tissue_type="fibroblast cell line"
/geo_loc_name="USA: Pittsburgh"
/collection_date="2023-08-31"
gene 1..3491
/gene="NRDE2"
/note="NRDE-2, necessary for RNA interference, domain
containing; Derived by automated computational analysis
using gene prediction method: Gnomon. Supporting evidence
includes similarity to: 191 long SRA reads, and 100%
coverage of the annotated genomic feature by RNAseq
alignments, including 16 samples with support for all
annotated introns"
/db_xref="GeneID:100389090"
misc_RNA 1..3491
/gene="NRDE2"
/product="NRDE-2, necessary for RNA interference, domain
containing, transcript variant X4"
/experiment="COORDINATES: cap analysis [ECO:0007248] and
polyA evidence [ECO:0006239]"
/db_xref="GeneID:100389090"
ORIGIN
atttctgtagcgaggaacggcggtgcggcctgtggtcatggcgctgttcccggcctttgcgggcgttagcgaggcccccgatagtgggagctccaggaaagagttagactggctgagcaacccaagcttttgtgttggatccgtaacgtccctgagccaacaacctgaagcagccacagcccatgtttctgaagggtcaccgctgtcgaggagtcctctgaaatcagagccttcagatgaaagtgacactaacaaaaagctcaaacaaacaagcagaaaaaagaagaaagagaaaaagaaaagaaggaagcatcagcatcataagaaaacaaagaggaaacatggacagtcgagtagcagtaggtcggagacagacactgattctgaaaaggacagaccttccagagccatcggaggccgtaaaaaggaatctgagaaaccgaatcaaggaaataatgcggcagctgatactggacatcgctttgtttggcttgaggacattcaggctgtgacaggagaaaccttcagaacagataagaaaccagatcctgcgaactgggaatacaagtctctctaccgaggggatatagcaagatacaagaggaaaggagactcctgccttggcattaatcctgtgaagcaacgcatatcttgggaagggacttccacagagaagaagcattcacgcaagcaggttgaacgctattttactaagaagagtgtggggttaatgaacattgatggaattgccattagcagtaaaactgaacctccatcatctgaccccgcctcctttataccagtgaaggacttggaagatgcagctcctgttacaacctggttgaatcctctggggatttatgatcagtcaaccacacagtggctacaaggacagggtcctccagagcaggaatcaaagcagccagacacacagccagacagcgagagtgcagctctcaaggccagggtggaggagtttaacaggagggtgcgggagaatccgcgggatacgcagctgtggatggcatttgttgcttttcaggacgaggtcatgaaaagtcctgggctgtatgccatcgaggaaggagagcaggaaaagcgaaagcggtccctgaagctcattctggagaagaagctggccatcctggagcgggccattgagagcaaccagagcagtgtggatctgaaactggccaagctgaagctctgcacagagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttacatcccaataatacagccctgtggcagaaataccttttgttttgccagagccagtttagtaccttttcgatatcaaaaattcacagtctttatggaaaatgcttgagtactttgtctgctgttaaggacggcagcatcttatctcaccctgcgttgcctggcacagaagaggccatgtttgggtggcaaccaggcttcttcccctctgccctcctgttcgcagcactctttcttcagcagtgccactttctgcggcaggccggccactctgagaaggccatctcattgttccaggccatggtggacttcaccttcttcaaacctgacagcctgaaagagatgcctaccaaaggacaggtggaattctttgagcccttttgggacagtggagagccccgggctggggaaaagggagcccgaggatggaaggcgtggatgcaccagcaggagcgaggtggctgggtggtcatcagcccagacgaggatgacgaagaaccagaagaggacgaccaggaaataaaagataagactctgcccaggtggcagatctggcttgctgctgagcgttcccgagaccagaggcactggcggccctggcgccctgataagaccaagaagcaaacggaggaagactgtgaggatcccgagagacaggtgctgtttgatgatatcgggcagtctttgatcagactctccagcgaagacctgcagttccagctggtggtggcctttctgcagttcttgggtgtgccttccggcttcactctgccagcctcctgtctttatctggccatggatgagcacagcatctttgataatggactttatgatgaaaagcccttgacttttttcaaccctttgttttccggggccagctgtgtgggccgcatggaccggctgggctgtcctcgctggaccaggggtcagaaccgagagggcgaggagttcatccgcaacgtcttccacctggtcatgcctttgttttcaggcaaagagaagtctcagctctgcttctcctggttacagtatgagattggaaaggtcgtgtggtgtctgcacactaaaaacaagaagagattaaagtcacaagggaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaaccgcaacaacttttgcctctggaagcagtatgcccatctggagtggttgcttggcaacacagaggatgctagaaaagtttttgacacagcactgggcatggcaggaagccaaggactgaaggactctgaactctgtgagctcagtcttctctatgccaagctggaggtggagctggaggtggagctgtcgccggaagtgagaggggccgcctccgcccgagctgttcacatattaaccaagctgaccgagagcagcccctacgggccctacactggacaggtgttggctgttcacattttgaaagcacgaaaagcttacgagcacgcgctgcaggactatttgggtgacagctgtgtctccgatccagctcccaccgattcttgtacccgcctaattagcttgtccaaatgcttcatgctcttccagtatttgactgtcgggattggtgctgctgtacggatatacgaacaggttagacggtagagagatccacgccacaattcctgagaccggcttaacgcatcggatccaagccctgtttgaaaatgccatgcgcagcgacagtggcagccagtgccccttgctgtggaggatgtatttgaactttttggtttccttaggaaataaagaaagaagcaaaggtgtattctacaaagcacttcagaattgtccgtgggcaaaggtgttgtacctggatgccgtggagtacttccccgaggagatgcaggaggtcctggatctgatgaccgagaaggagctccgggtgcgcctgccactggaggagctggagctgctgctggaggattagagccgcggggaatagaccgtgcctatgaggccaagtcgcccacctggcagagccaggcggcatgagcggagaatgtgtgcgttagagacctcagcttttgaaatgttctttctcaatattaataatgtgtctgggctggcagcctctcacatctggcacacttttggggtgtgaaaatgacacaaaagctgtttacatattatatatgtgtatgtgtgtatatatgtacatagccagggagtcatgccaagtggtcattaaaccgatgatgattga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]