GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2026-04-25 22:30:05, GGRNA.v2 : RefSeq release 233 (Jan, 2026)

LOCUS       XR_013386744            4954 bp    RNA     linear   MAM 06-DEC-2025
DEFINITION  PREDICTED: Canis aureus NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X2, misc_RNA.
ACCESSION   XR_013386744
VERSION     XR_013386744.1
DBLINK      BioProject: PRJNA1372771
KEYWORDS    RefSeq.
SOURCE      Canis aureus (golden jackal)
  ORGANISM  Canis aureus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae;
            Canis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_135619) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_053574225.1-RS_2025_12
            Annotation Pipeline         :: NCBI Eukaryotic Genome Annotation
                                           Pipeline (EGAP)
            Annotation Software Version :: 10.5
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/03/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4954
                     /organism="Canis aureus"
                     /mol_type="transcribed RNA"
                     /isolate="CA01"
                     /db_xref="taxon:68724"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /geo_loc_name="Austria"
     gene            1..4954
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 22 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:144321038"
     misc_RNA        1..4954
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
                     /db_xref="GeneID:144321038"
ORIGIN      
acttcccagagtgcaccgcgagagctaaggcctcactaccggcgtccgcgccccggcgccatttctgtagaggggacggcagcgcggcctgtggccatggcgctgttcccggcctttgctggcattagtggggctccggatggcggcagcgcgaggaaagaattagactggctgagcaacccgagcttttgtgttggagccataacctctctgagccaacaacctgaagaggtcactgccttggtttctgaagggtccccactgaccaggagtcctctgaaatcagaaccctcagatgaaagtgacagtaacaaaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaagaggaagcatcaccacaagaaaatcaagagaaaacatgggcagaccagtagcagtggatctgagccagatagtgagcctgataaggacaaaaattccagaagcattggagatagtaaaaaggaatcagagaaaccaagtcgagaagataatgctgctgctgctgctgctattgggcatcgcttggtttggcttgaggacattcaggctctgaatggaggagaaaccttcagaacagataagaagccggatcctgcaaactgggaatataagtctctctacagaggagacatagcaagatacaagaggaaaggagactcctgccttggcattaaccccaagaagcagtgtatatcctgggagggggcttccacggaaaagaagccttcgcacaagcacgttgagcgctattttacgaagaagagtgtggtattaatgaacatggatggagttgccgttggcagtaaaaacgaacctccctcatctgagccaatctcgtttatcccagtgaagggcctggatgaggtggttcctcccgttacaacctggttgaaccctctggggatttacgatcagtccaccacgcagtggttacaaggacagggtccttcagagccagaatcgaagcagccagactcacagacggacagagagagcgcactactcaaggccaaggtggaggagttcaacaggagagtccgggagaacccccgggacattcagctctggatggcatttgttgcttttcaggacgaagtcatgaaaagccctggcctgtatgccatcgaggagggagagcaggagaagcggaagcggtctctgaagctggttctggagaagaagctggccatcctggagcgggccattgagagcaaccagagcagcgtggagctgaagctcgccaaactgaagctctgcacggagttctgggagccctccaccctggtcaaagagtggcaaaaactgatattcttacatcccaacgatacagccctttggcagaagtaccttttattttgccagagccagtttagcaccttcaccgtgtcaaagatccacagtctttatggaaaatgcctgagcaccttgtctgcggtgaaggatggcagcatcttatcgcaccctgccttgccgggcaccgaagaggcaatgtttgcgctctttcttcagcactgccacttcctgcggcaggccggtcactcagagaaggcggtctctctgttccaggccatggtggacttcaccttcttcaaacccgacagcgtgaaagacctgcctaccaagggacaggtggacttctttgagcccttctgggacagcggggagccccgggccggggagaagagcgcccgaggctggagagcatggatgcaccagcaggagcgagggggctgggtggtcatcggtgcagatgatgaggatgatgaaccagaagacgaggaccaggaaataagagataagagcctgcccaagtggcagatctggcttgccgccgagcggtcccgagaccagaggcactggcggccatggcgccctgataagtccaagaagcaaactgaggaagactgtgaggaccctgagagacaggtgctgttcgatgacatctcgccatctctgatccagctctccagcccagatcttcggtttcagctggtcgcagcctttctgcagttcctgggcgtgccctctgacctcagccccccagcctcctgcctctacctggccatggatgagaacagcatctttgacaatgggttttatgatgaaaagccgttgacttctctcaacctttccttttctggcatcagctgtgtgggccgctcagacccactgggctgccggcgctggacccggggtcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctctgttttcaggccaggagaggtctcagctctgcttctcctggctacggtacgagatggcgaaggtcatctggtgtcttcacactaaaaacaagaaaaggttgaagtcgcaaggaaagaactgcaaaaaactagccaaaaatctccttaaggagccagaaaaccgcaacaatctctgcctctggaagcagtatgcgcacctggagtggctgctgggcaacacggaggaggcccggaaggtgttcgacagtgcgctcagcgcggcagggagcagggagctgagggactgggaggtgtgtgagctcagcctgctgtacgccgagctggaggtggagctgttgccagacccgaggggggcctctgcggcccgcgccgtccacgtgctgaccagactgaccgagagtggtccctacgggccctactctgggccagtcttggccgtccacatcctgaaagctcggaaggcatacgaacatgcgctgcaggactgtctgggggagagctgggtctgcagtcccgcccccaccgcccctgcagcgccctgtcaccgcctcgttagcctggtgaagtgcttcatgctcttccagtacttgactgtggggatcgacgccgctgtgcgggtatgcgagcaggtgtacgcaaaactgaagggctccacttcctccggtggctccagccccgaggacgcaggcagcgcacagagcccgagcagcgttcttgaggctgtcatgctgatgcacaccagcctgctccgattccacatgaaggtcagcgtttaccctctggctcccctgcggcaggcactctcggaggccctgcagttgtatccgggcaaccaggttctttggaggtcctatgtgcagattcagagtaagtcccacacagccagtaagaccagaagattcttcgatgccattaccaggtctaccaagcccttggagccttggttgtttgcgattgaagccgagaagatgaggaagacgttggtggaaagtgttcagagggtggatggcagagatgtccacaccacgattcccgagactggcctgacgcatcggatcaaagccctgtttgaaaatgccttgcggagtgacagcggcagccagtgccccttattgtggagaatgtatttgaatttcttggtttcctcaggaaacagagagaggagcaaaggcgtgttctacaaagccctgcagagttgtccttgggcaaaggtgctgtacctggacgctgtgcagcacttccctgaggagatgcaggagatcctggacctgatgacagagaaggagctccgggtgcgcctgcccatggaggagctcgagctcctgctcgaggactagagcccaggcaggagggtgccgacgtggaccatgggcctgagtgtgcttgcaagacctctgcctttgaagtttctgatcttagtgtttgtacctaggctatccgtgtcttacctcttgcacattttgggatgtgcagacaacctagaagcttctgtttgcatattatatatgtgaccatgtggacgtgtagggtgccaagacgccgtgtgaggtcacctgatctgcagaccttccagcgccgaaagctgtttccttaaagccatggccaccctctcagcctttgttgctgagacagtggagacacttccccgtgagctgctgtcagctgggcaagaggtgtggagtctgcatccagtcctcacccaggagcctccacctgcttgctgctgctgagtgccagtgtggaggctgcagaaacaggatgaactgctggagggggatcacgctttattggggacagagcactgcacgtgacccacagaggaaggcagcccagggggtgtcctacacatcacgcgcaaaaaggtacacgggaggttttgctaagaaagatcaactggaacatggtttcctccgggggcttcccccacctcctccctcggaggggtcaggacatgcccaaccatctcctgaaggcagctctggtccgctagagatacagtccctcgggggtgccctcttgttttttataaagaacattttctttagatttcttgaagtcttcatttgttactttcatccgacgctctctcaaggccatcagaccagcctctgtgcagatggcctgtaagaaagaatggtatgttcagaaagggaaatactttttatttgcattctaacaactcgagagcgactttgagtgaggcgtgagacgcgcagactaaacaaactgcttaagccatttggggaaaaaagatctttttgaatgttttacacattgtaattattttctcagaggatcagaagtggctttgaggggaggacagactccggttctaaccagcgggtggcctggtagggaagttctcaatgtgcagggagcaatgttcccaggccacggaggcatttacaccagagagcatccatttcatttacggtcatgagagaaaaggcgtaaatctcaggacaatatttatggtgatacgtttattttctcagtcatcacttgtcaaaagtaaaactagaacccaggcaacatgacaggacaaaaacacagtcctgacactgaagtttctatctggttttggccttcaggatatttcaaatggtttagcaaaaaagaaaatgttatttgtggacaaaaagataaggcaaagcaataaaatggtaacttttgataaatcga
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]