ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2026-04-25 22:30:05, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XR_011258035 6813 bp RNA linear MAM 12-DEC-2024
DEFINITION PREDICTED: Ovis canadensis NRDE-2, necessary for RNA interference,
domain containing (NRDE2), transcript variant X5, misc_RNA.
ACCESSION XR_011258035
VERSION XR_011258035.1
DBLINK BioProject: PRJNA1175682
KEYWORDS RefSeq.
SOURCE Ovis canadensis (bighorn sheep)
ORGANISM Ovis canadensis
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
Pecora; Bovidae; Caprinae; Ovis.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_091251) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_042477335.2-RS_2024_12
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.3
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 12/06/2024
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6813
/organism="Ovis canadensis"
/mol_type="transcribed RNA"
/isolate="MfBH-ARS-UI-01"
/db_xref="taxon:37174"
/chromosome="7"
/sex="male"
/tissue_type="lung"
/dev_stage="fetus"
/geo_loc_name="USA: Washington State University, Pullman"
/collection_date="2022-05-14"
/breed="Bighorn"
gene 1..6813
/gene="NRDE2"
/note="NRDE-2, necessary for RNA interference, domain
containing; Derived by automated computational analysis
using gene prediction method: Gnomon. Supporting evidence
includes similarity to: 149 long SRA reads"
/db_xref="GeneID:138443231"
misc_RNA 1..6813
/gene="NRDE2"
/product="NRDE-2, necessary for RNA interference, domain
containing, transcript variant X5"
/db_xref="GeneID:138443231"
ORIGIN
attgtgaagcgacaggaactattttcacatacctcttgccagaaatcaggcccgagagaagggaaccagcagagaaggagaaaggagacagcagaggaaagcccgcgtgagcagcggtctcagcgcccctcggtcaggcctcaccgcttgctccgtgccttgagtctcctctcctgcgcagtggagaccgtggttcctcctgcaggggggtgttgtgagggttaaaatatgtaagttgcttaatctgttgcttggcctgcagtcaggccctccgtagctagattccctctcttctttcccttttttcccgtgctgtttctctttcctcttcaggagcttttcttccttcttccacccactcttttccacagatgtttgttaaactcctactgatgtgtgccaggcatcggtctcagtgctggggatacagcagtgagtgaaacgtcgggatgcgcattccagtatcccctcctcactacgatgcacttagcatcagggactaggatacagaatgtataaagaagtcttacaactcaatagtaaaaacacatcccaattaaagaatgggccaaagatttgaataactgtttctcctgaattacggagggccaagaaacgcgtgaaaagattctcgacactgagtcagcagggagatggaaaccaccatcacagtgaggaaaccccgcgcgcagcaggactggggtccggaggacaggagtgagctgccagcgacttggagaaggtggagcctcacgcgtgccttgctcaccggagcatacagcgtgtggccgatgcggaaagcagtctggcagtcctcaacgtgctgaacatgggttccgataggacctagcagctctgctcctagatggctgcccaagatgacggaaaacgtgggtccacatggaaaccggtgcctgaatgcttacagcagggtttgttaagcaggcacaaagtgggagcagcccgtgtccctcagctgacagtggataagatgtcccccaactgaagatggaaacccatcagctagaatcgcccttgttgttcagtcctgagtcgtgttcacctctctgcaacccgtgagctgcagcacgccaggcgtccctgtccttcaccatctcccggagctggcgcaaactcctgcccactgaactggtgatgccagcccgccatctcgtcctctgctgcgcccttctcctcatgcctccagtcttcctaagcatcaaggtcctttccaatgagatgattctgcagcagaatggagtgagattctgatacacgctgcatacagcacagatggaccttggagacattacgtcaagtgaacgaagccagttataaaagaacacgcattgaatggtcttgtttatagtaaaatattcaaaagaggcaactctatagcaagtagagcggggcttgcttatggctcgtgggggcggtgtgggagagcgggaggcgggtgaccacagacgggtgggggctccttggggagggtggagacgttctgaacttgcggtgagggtggcgggattctggatgcattgaggccactgactggcacgtgcgctgtgtcccagcgcagctgtcacacaggctgactcccccgctcgcgccccactgccgccgcttcgcgcgttctttctcctgagcgtggggttatgccctggctcccaaacagagcgggacgaggtccctgccctccacgggccgcctcgctgccaccccgcgtttccccttccagccaagactgctaaaggttagaagatgggtaatttagaaattgtaaattgtagaagagtcagaaacgaatggatgagcaggaagaactgttctcgggcgtttaacctcaccacccggagataatcatgcttcataccttgtatagttttagcattcatttagaaagttgacaccttccatttttgttttcgccgagtactgttatgagggaaaacttctgttgcgttcctctaaagattgctgttgtttagttgctgagttatgtccaactcttttgtgtccccgtggactgtgacatgcaaggctcctctgctcaagggatttcacaggcaagaatactggagtgggctgccgtttcctgttccagggaatattcccgacccaggggttggacccacgcctcctgccttggcagaattagactggctgagcaacccaagcttctgtgttggagccataacatctctgagccgacaatctcaagaggccaccgcagcccctgtttctgaagggtcaccgctgacaaggagtcctctgaaatcagagccttcagatgaaagtgacactaacagaaagcccagagaaacaagcaggaaaaagaagaaagagaaaaagaagaaaaggaagcttctgcgccacaagaaaaccaagagaaaacgtgggtcgtcgggcagcagtgggtctgagtcagacactgattctgaaaaggacagaccttccagaagcgccagagacaggaaaagggaatcagagaaacagaatcaaggaaataatgctgctgcggataccggacgtcactgtgtttggcttgaggacatccaggctctgacgggagaaaccttccgaatggataagaaaccggatcctgccaactgggagtacaagtctctttaccgaggagacgttgccagatacaagaggaaaggagactcctgcctcggcctcaacccgaagaagcagtgtatatcttgggaggggacttccacagaaaagaggcattcccgcaagcacgtggagcgctactttacgaagaagagcgtggggttaatgaacgtggagggcctcgccgtcagcaggcagcccggagctccgtcgtcggagccgctctcctttatcccggtgaagggcgtggacgacgcggctccccctgctaccagctggctgaaccctctggggatttatgatcaagccactacgcagtggttacagggacggggtccttcagagcaggagtccaggccaccagactcacagcccaacagagagggcgcgctcctcaaggccagggtggaggagtttaacaggaaggttcgcgagaaccctcgggacacagagctgtggatggcctttgttgctttccaggacgaggtcatgagaagtccaggcctctacgccgtggaggaaggagagccggagacacggaagcggtccctgcggctggtcctggagaagaagctggccgtcctggagcgggccatcgagagcaacccgagcagcgtggacctgaagctcgccaagctgaagctctgcaccgagttctgggagcccaccactctgctcaaagagtggcagaaactgatcttcttacatcccaacaacacagccctctggcagaaatacctgttgttttgccagagccagttcagcaccttctctgtatcaaaaattcagagtctgtacgggaagtgcttgagcaccctgtccgccgtgagggacggcagcatcgtctcccaccctgagctgcccggcaccgaggaggccatgtttgccctcttcctccagcagtgccacttcctgcggcaggctggccacaccgagaaggccgtgtctctcttccaggccatggttgacttcacgttcttcaagcctgacagtgtgaagggcctgcccaccaaaggccaggtggagttctttgagcccttctgggacagcggcgagccccgggccggggagaagggcgcccggggctggagagcctggatgcaccagcaggagcggggcggctgggtggccgtcggcccagatgatgacgacgacgagccggcggacgaggaccaggagattagagacaagacgctgccccggtggcagatctggctggccgccgagcggtcccgagaccacagacactggcagccgtggcgcccggacaaggctaggaagcagacggaggaagactgcgaggaccccgagagacaggtggtgttcgacgatctcggccagtctctgatccgactgtccagcccggatctccagtttcagctgatggcggccttcctgcagttcctgggggtgccttccggcttccgcgcccccgcctcctgcctctatctggccatggacgagaacagcatcttcgacaacgaactttatgacgaaaagcccttgactctccccgacctctcctgctccggcgtcggctgtgtgggctgcatggagcctctgggcggccggcgctggccccggggtcccagtcgagagggcgaggagtttatccgcaacgtcttccacctggcgctgcctctgtttgcaggcagggagcggtctcagctctgcgtctcctggctacggtacgagatcaccaaggtcatttggtgtctgcacactaaaaacaagaagagattaaagtcacagggaaagaactgcagaaaactagccaagaatctcctcaaggagccggacggccgcaacagcttctgcctctggcagcagtatgcgcttctggagtggttgctgggcaacacagaggacgcccggaaggtcttcgacgcagccctgggcaccgcagggagccggggcctggaggacccggagctctgcgagctcggcctgctctacgctgcgctggaggcggagctgtcgccgcccgtgggcggggccgccccagcccgggccgtgcacgtgctgaccgggctgactgagcgcggcccctacgggccctgcacgggacaggtctcggccgtgcgcgttctgaaggctcggaaggcgtacgaacacgcgctgcaggactgtctaggggagcgcggccctgacccgggcccccccgaccgcttcagccgcctggtcagcctggcgaagtgcttcctgctcttccagtacctgaccgtgggggtccacgccgctgggcgcgtctatgagcaggtgtctgcggagctccggggctctgtctccgcggagggcgccggcctggagggcgccctggaggccgtcaccctgatgcacaccagcctgctcaggttccacagcagggttgccgcccacccactggctccgctgcgagaggcgctctcagaggctttacggttgtacccgggcaaccagcttctctggagggcgtacgtgcagattcaaggcaagtcgcacagcgccagcaggaccagaagattcttccacgccatcaccaggtccaccgagctcctggagccgtggctgtttgcgattgaagcggagaggatgcggaagaggctggtggatgctgtgcagagggtggacggtagagaggtccatgccacccttcctgagaccggcctgacgcaccggatcagagccctgtttgagagcgccgtgcggagtaaccacgggagccagtgccccttgctgtggaggatgtacctgagcttcctggtaggacagacgccgggggtctgttgctgtgcagagcgctgttcctctaacagaagagcagggcaggggctcaggacccgggagatagactgactgaggaggggccgctcaggacccgggagggggctggtagactgaggagggggctcaggacccgggaggggcctggtagacagaggagggggctcggagcccgggaggggcctggtagagtgcctgaggagggccacctgggccgctggggccccggggtacctgtgtgtttctctgaattaacttcgtggaggcagcaacttggaaatcggtctaagagctttcactcgaaagagacctgagcctgttgctcttctgcttctgagaatgtccaggtcccgattcggttttgttactaaaaggtaagattcagtgtggactgtggtttttaaaagaggcatttccaaagcagctttgtttttacttggaggcgccacagccatttaattttgccaatgggttgtgcaggctgaaaggtggttcccgggccccacggggtctgagttggctctgtctttggttaaaggcctgacgtcgggctgcacttcctgtatcataacacatctactgccgagtttcatgggtttttagaaacagtcttccagccacttgagtgtctagacagtgctcacggctgttacgtcatatcaaagtgccctccgctgaccactgtacctttcagaagccctgaggggccttcctattacataaatatgtgtatctctgattatttccataggataatttctcagaagtttatcaaagtatttgaacattccccactgatgtttgacagagagggatgtaaaaaagacacggataggaaggtaggggctaagataagttcagggctagaagtccgggcctcccccagcctcttagagtccagagcttatctgggagcgcctcccctgagctctgaacggcctggacagcttgtctcaagacagcagctctcaggcacgctcccagcacgaacgggccccaggcggccccaggatgagctatcaccgaagtttctgtggtttcaacgtttattcttcacgctcaaaagcgtagatttcacgtgttgcctccttggtgtgggatgggagcctccagaagtccaggcgcctctgtggtgtccctgccccgggtggccatccttgctgggcggccatcggggtgtccctgctgggcggccgtcgaggtctgctcgtcgccaggcccctcagccgaaggaacggctcggatgctttcggttccagcgccagcgccctgtgagtctgtgccgctgagagacctttccacttacgacgcgggagagcttgcgaattcgccagcttaactccttccaggcttttccaggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcactgcagaattgtccttgggcaaag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]