2024-11-19 20:17:57, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_010606286 3519 bp RNA linear VRT 07-JUN-2024 DEFINITION PREDICTED: Caloenas nicobarica NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, misc_RNA. ACCESSION XR_010606286 VERSION XR_010606286.1 DBLINK BioProject: PRJNA1103788 KEYWORDS RefSeq. SOURCE Caloenas nicobarica (Nicobar pigeon) ORGANISM Caloenas nicobarica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Caloenas. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_088249) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036013445.1-RS_2024_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/05/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3519 /organism="Caloenas nicobarica" /mol_type="transcribed RNA" /isolate="bCalNic1" /db_xref="taxon:187106" /chromosome="5" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /geo_loc_name="USA: Bronx Zoo, New York" /lat_lon="40.8501 N 73.8767 W" /collection_date="2023-05-05" /collected_by="Charles Alex" gene 1..3519 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:135989238" misc_RNA 1..3519 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /db_xref="GeneID:135989238" ORIGIN
gtagtggcggcaagcggagccatggcgctgttcccggcctttgccggggccgccgagcccggggagcccccagccggcagcagcgagggctccaggaaagaattggactggcttagtaacccaagcttctctgcggaagatgcactgttactgcatcagcgcactacagaagttgcaaatctcatccctgaaaaatcaccactaataaggactccttcaagatcagagttgtcaggggaaagtgatacagatgagagtctgaaacaggcaagtaagaaaagaaaaaagcaaaagaaaaagcatcaccactacaagaagacaaaaaagaaaaccaaaggggactccagtagcagcgagtcggacctgaacactaagcacatcaaggacaaagctgcaggaagctccagaaatcacgaaaaggaagcagcagcaaacctagataagaaaacgtcaagtcttaccagcagtcgctttgtttggcttgatgatgtccaggctttcacagcagaaaccttcaggatagacaagaaaccagaccctgcaaactgggcctacaaatccttgtatcgaggggacatagcaaggtataaaaggagaggagagtcctgtcttggcatagatgcaaagaaacaatgtataacttgggacagttctgcatcaaaaaagaagcaattgcagaggcaacctgagcgctacttcacaaagaacaatgtgaagatactgaacacagatgggatttctgtttgcaagaaaagttctccatctaacccaactgcttttataccagttttcgaaatggaaactgatgatccttctggcacaatggaggtaaatcctcttgggatttatgatccatcagctacagtgcagctacaaggaaaaggatgcagggctgcagaccatgatcctgtaaatacacagcaaacaattcaagagcctgggataaatatcaactccattttattgacaaaagtagaagaacataacaggaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggatctagcctttatgccagcaagggagagcaggaagtaagaagaaaatcactgaagttaatcttggaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgccaggctgaagctttgcgctgaattctgggaaccaccagctttgatcaaagaatggcagaagctaattttcttacatcccaataatccagagctgtggaagaaatatctcctgttctgtcaaagtcagttcactaccttttctgtttcaaaaatcaatagtctctacggaaaatgcttgacaacattggcagctgtacaagatggcagcatggtatcgcatcctctgctgcctgggacagaagcagctatgctagctatatttattcagcagtgccacttcctgaggcaggctggccattctgagaaagcggtgtctttgtttcaagctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagagaaaggagcaagaggctggaaagcgtggatgcaccaacaagaaaagggtggctggattgctgttaagtctgatgatgatgatgaagaagagatagatgaggatcaagaaataaaggataaaactctccccaagtggcacatttggatggatattgaatattctcgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaaccgaagaagattgtgaagatccagaaagacaggtattatttgatgatcttggaccatctttaatccgtctttctaatccagatcttcaacatcaactgctgtactcatttttgcaattcctgggagttccatgcacaagtaaactctttccttccaacctttatattgccatggatgaaaataacatttttgacagtgggctttctgatgaaaagccactgacttctgttgattttccactttctggattcaacagtattggtcatatggacacgatgctacgagggagacatcacataggccactgtaaagaaggagaggagttcatacacaatgttttccatgttctgttcctgctgttttcaggaaaggaaaagtgcaatctgtccatttgttggttacagtatgaaatatctaagatcgttcagtgccttcaaacaaaaaaaaagaagcagctgaaagtacaagggaggaagagtaaaaagttggccaagaatctccttaaagcacctgacaaccgaaatgacctttctctctggaaactgtacgcctacttagaatggctgctcggtaacactgacgacgccaggaaggtgcttgacacggctctttgcacagcaggaacaggaggattgaagagttcccagctctgcagccttggtctgctttatgctcagctggaagtggaactactagaaagtctagaaggagctgttatgtcacgtgctgttcatgtgttgaccaaattggctgaaagtggaccatatgtaccctatagtggacaagtgtcacctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactgcaagattatttcagtaaaacactggtttctgatcaggatcgggtcagcgatgctaatcagctggttaacttggttggttgttacgcactgttccagtatttgactgttgggattgatgctgcagtattaatatatgcacagacttcagaaaaacttgaagctcttggtccacagaaatgggaaaatactagagagaattttggcattcaaaattttcccactgctctggaagctgtcacactgctgcatacaaatttactcagattccacatgaaaattagcatttatcctttgaatcctttgcgagaggcactaacggaggctctgaaacggtatcctagcaaccagtctctttggaggtcatatattcacatccaaaggaagtctcacagtgctagcaaagcccgaagattttttgatggtgtcacaaggtctactgattctttagaaccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcattgagaatgtccagagggcaggtgctggtgaaatacattccactattcctgaaactgggttaacaaatcggattatagcgctatttgaacatgcagttcagagtgaaaatggtacccattgtccgctgctgtggagaatgtatttgaactttctggtaaagccctgaaactccttaaagacatctcttgcattacattgaagagtgtaacctgtcaaactgcatagcttccacaatgtatagtaatagggattcttcaacagaggcttcaataggaaacaaagaaaagagtaaaggattgttttacaaagcccttcaaaactgtccttgggcaaaggt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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