2024-11-19 20:45:40, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_010472817 3424 bp RNA linear VRT 08-MAY-2024 DEFINITION PREDICTED: Columba livia NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, misc_RNA. ACCESSION XR_010472817 VERSION XR_010472817.1 DBLINK BioProject: PRJNA1106885 KEYWORDS RefSeq. SOURCE Columba livia (rock pigeon) ORGANISM Columba livia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_088606) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036013475.1-RS_2024_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/03/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3424 /organism="Columba livia" /mol_type="transcribed RNA" /isolate="bColLiv1" /db_xref="taxon:8932" /chromosome="5" /sex="female" /tissue_type="blood" /dev_stage="adult" /geo_loc_name="USA: Davis, CA" /lat_lon="38.513750 N 121.754494 W" /collection_date="2023-03-29" /breed="racing homer" gene 1..3424 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 107 long SRA reads" /db_xref="GeneID:102089446" misc_RNA 1..3424 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /db_xref="GeneID:102089446" ORIGIN
cgcggcgccatcttgccccgccgctccgcagggcggatcgggcagagtagtggcggcaagcgcagacatggccctgttcccggcctttgctggggccgccgagcccggggagcccccagccggtagcagcgagggctccaggaaagaattggactggcttagtaacccaagcttctctgcggaagatgcactgttactgcatcagcgcactacagaagttgcaaatctcatccctgaaaaaccaccactaataaggactccttcaagatcagagttgtcaggggaaagtgatacagatgagagtctgaaacgggcaagtaagaaaagaaaaaagcaaaagaaaaagcatcaccactacaagaagacaaaaaagaaaaccaaaggggactccagtagcagtgagtcggacctggacactaagcacatcaaggacaaagctgcaggaagctccagaaatcacgaaaaggaagcagcagcaaacctagataagaaaacatcaaatcttaccagcaatcgctttgtttggcttgatgatgtccaggctttcacagcagaaaccttcaggatagacaagaaaccagaccctgcaaactgggcctacaaatccttgtatcgaggagacatagcaaggtataaaaggagaggagagtcctgtcttggcatagatgcaaagaaacagtgtataacttgggagagttctgcatcaaaaaagaagcaattgcagaggcaccctgagcgctacttcacaaaaaacaatgtgaagatactgaacacagatgggattcctgtttgcaagaaaagttcttcatctgaccccactgcttttataccagtttttgaaacggaaactgatgatccttctggcacagtggaggtaaattctcttgggatatatgatccgtcagctacagtgcagctacaagaaaaagggtgcagggctgcagaccatgatcctgtaaatacacagcaaacaattcaagagcctgggataaatatcaactccaccctaatgacgaaagtggaagaacataacaggaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggatctaacctttatgccagcaagggagagcaggaagtaagaagaaaatcactgaagttaatcttggaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgccaggctgaagatttgcactgaattctgggaaccaccagctttgatcaaagaatggcagaagctaattttcttacatcccaataatccagagctgtggaagaaatatctcctgttctgtcaaagtcagttcactacgttttctgtttcaaaaatcaatagtctctacggaaaatgcttgacgacattggcagctgtacaagatggcagcatggtatcgcatcctctgctgcctgggacagaagaagctatgctagctatatttattcagcagtgccacttcctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggttgaattctttgaacccttttgggatagtggagaaccacgaattggagagaaaggagcaagaggctggaaagcgtggatgcaccaacaagaaaagggtggctggattgctgttaagcctgatgatgatgatgatgaagagatagatgaggatcaagaaataaaggataaaactctccccaagtggcacatttggctggatattgaatattctcgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaaccgaagaagattgtgaagatccagaaagacaggtattatttgatgatcttggaccatctttaattcgtctttctaatccagatcttcagcgtcagctactgtactcatttttgcaattcctgggagttccatgcacaagtaaactctttccttccaacctctatattgccatggatgaaaataacatttttgacagtgtgctttctgatgaaaagccactgacttttgttgattttccactttctggattcaacagtattggtcatatggacacgatgctacgagggagacatcacataggccactgtaaagaaggagaggagttcatacacaatgttttccatgttctatccctgctgtttacaggaaaggaaaagtgcaacctgtccatttgttggttacagtatgaaatatcgaaggtcattcagtgtctccaaacaaaaaaaaagaagaagctgaaaatacaagggaggaagagtaaaaaattggccaagaatctccttaaagcaccagacaaccgaaatgacctttctctctggaaactatacgcctacttagagtggctgcttggtaacactgatgacgccaggaaggtgcttgacacggctctttgcacagcagggacaggagggttgaagagttcccagctctgcggcctcggtctgctttatgctcagctggaagtggaactactagaaagtctagaaggagctgttaggtcacgtgctgttcatgtgttgaccaaattggctgaaagtggaccatatgtaccctatagtggacaagtgttacctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactgcaagattatttaggtaaaacaccggtttctgatcaggatcgggtcagtgatactaatcagctggttaacttggttggttgttacgcactgttacagtatttgactgttgggattgatgctgcagtattaatatatgcacagacttcagaaaaacttgaagctcttggtccacagaaatgtgaaaatactggagagaattttggcattcaaaattttcccactgctctggaagctgtcacactgctgcatacaaatttactcagattccacatgaaaattagcgtttatcctttgaatcctttgcgagaggcactaacggaggctctgaaacggtatcctagcaaccagtctctttggaggtcatatatccacatccaaagaaagtctcacagtgctagcaaagcacgaagattttttgatggtgtcacaaggtctactgattctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaagactcattgagaatgtccagaggtgctggtgaaatacattccactattcctgaaactgggttaacaaatcggattatagctctgtttgaacatgcagttcagagtgaaaatggtacccattgtccgctgctgtggagaatgtatttgaactttctggcttcagtaggaaacaaagaaaaaagtaaaggattgttttataaagc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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