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2024-11-19 20:45:40, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XR_010472817            3424 bp    RNA     linear   VRT 08-MAY-2024
DEFINITION  PREDICTED: Columba livia NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X2, misc_RNA.
ACCESSION   XR_010472817
VERSION     XR_010472817.1
DBLINK      BioProject: PRJNA1106885
KEYWORDS    RefSeq.
SOURCE      Columba livia (rock pigeon)
  ORGANISM  Columba livia
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae;
            Columbiformes; Columbidae; Columba.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_088606) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036013475.1-RS_2024_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/03/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3424
                     /organism="Columba livia"
                     /mol_type="transcribed RNA"
                     /isolate="bColLiv1"
                     /db_xref="taxon:8932"
                     /chromosome="5"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Davis, CA"
                     /lat_lon="38.513750 N 121.754494 W"
                     /collection_date="2023-03-29"
                     /breed="racing homer"
     gene            1..3424
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 ESTs, 107 long SRA reads"
                     /db_xref="GeneID:102089446"
     misc_RNA        1..3424
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X2"
                     /db_xref="GeneID:102089446"
ORIGIN      
cgcggcgccatcttgccccgccgctccgcagggcggatcgggcagagtagtggcggcaagcgcagacatggccctgttcccggcctttgctggggccgccgagcccggggagcccccagccggtagcagcgagggctccaggaaagaattggactggcttagtaacccaagcttctctgcggaagatgcactgttactgcatcagcgcactacagaagttgcaaatctcatccctgaaaaaccaccactaataaggactccttcaagatcagagttgtcaggggaaagtgatacagatgagagtctgaaacgggcaagtaagaaaagaaaaaagcaaaagaaaaagcatcaccactacaagaagacaaaaaagaaaaccaaaggggactccagtagcagtgagtcggacctggacactaagcacatcaaggacaaagctgcaggaagctccagaaatcacgaaaaggaagcagcagcaaacctagataagaaaacatcaaatcttaccagcaatcgctttgtttggcttgatgatgtccaggctttcacagcagaaaccttcaggatagacaagaaaccagaccctgcaaactgggcctacaaatccttgtatcgaggagacatagcaaggtataaaaggagaggagagtcctgtcttggcatagatgcaaagaaacagtgtataacttgggagagttctgcatcaaaaaagaagcaattgcagaggcaccctgagcgctacttcacaaaaaacaatgtgaagatactgaacacagatgggattcctgtttgcaagaaaagttcttcatctgaccccactgcttttataccagtttttgaaacggaaactgatgatccttctggcacagtggaggtaaattctcttgggatatatgatccgtcagctacagtgcagctacaagaaaaagggtgcagggctgcagaccatgatcctgtaaatacacagcaaacaattcaagagcctgggataaatatcaactccaccctaatgacgaaagtggaagaacataacaggaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggatctaacctttatgccagcaagggagagcaggaagtaagaagaaaatcactgaagttaatcttggaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgccaggctgaagatttgcactgaattctgggaaccaccagctttgatcaaagaatggcagaagctaattttcttacatcccaataatccagagctgtggaagaaatatctcctgttctgtcaaagtcagttcactacgttttctgtttcaaaaatcaatagtctctacggaaaatgcttgacgacattggcagctgtacaagatggcagcatggtatcgcatcctctgctgcctgggacagaagaagctatgctagctatatttattcagcagtgccacttcctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggttgaattctttgaacccttttgggatagtggagaaccacgaattggagagaaaggagcaagaggctggaaagcgtggatgcaccaacaagaaaagggtggctggattgctgttaagcctgatgatgatgatgatgaagagatagatgaggatcaagaaataaaggataaaactctccccaagtggcacatttggctggatattgaatattctcgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaaccgaagaagattgtgaagatccagaaagacaggtattatttgatgatcttggaccatctttaattcgtctttctaatccagatcttcagcgtcagctactgtactcatttttgcaattcctgggagttccatgcacaagtaaactctttccttccaacctctatattgccatggatgaaaataacatttttgacagtgtgctttctgatgaaaagccactgacttttgttgattttccactttctggattcaacagtattggtcatatggacacgatgctacgagggagacatcacataggccactgtaaagaaggagaggagttcatacacaatgttttccatgttctatccctgctgtttacaggaaaggaaaagtgcaacctgtccatttgttggttacagtatgaaatatcgaaggtcattcagtgtctccaaacaaaaaaaaagaagaagctgaaaatacaagggaggaagagtaaaaaattggccaagaatctccttaaagcaccagacaaccgaaatgacctttctctctggaaactatacgcctacttagagtggctgcttggtaacactgatgacgccaggaaggtgcttgacacggctctttgcacagcagggacaggagggttgaagagttcccagctctgcggcctcggtctgctttatgctcagctggaagtggaactactagaaagtctagaaggagctgttaggtcacgtgctgttcatgtgttgaccaaattggctgaaagtggaccatatgtaccctatagtggacaagtgttacctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactgcaagattatttaggtaaaacaccggtttctgatcaggatcgggtcagtgatactaatcagctggttaacttggttggttgttacgcactgttacagtatttgactgttgggattgatgctgcagtattaatatatgcacagacttcagaaaaacttgaagctcttggtccacagaaatgtgaaaatactggagagaattttggcattcaaaattttcccactgctctggaagctgtcacactgctgcatacaaatttactcagattccacatgaaaattagcgtttatcctttgaatcctttgcgagaggcactaacggaggctctgaaacggtatcctagcaaccagtctctttggaggtcatatatccacatccaaagaaagtctcacagtgctagcaaagcacgaagattttttgatggtgtcacaaggtctactgattctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaagactcattgagaatgtccagaggtgctggtgaaatacattccactattcctgaaactgggttaacaaatcggattatagctctgtttgaacatgcagttcagagtgaaaatggtacccattgtccgctgctgtggagaatgtatttgaactttctggcttcagtaggaaacaaagaaaaaagtaaaggattgttttataaagc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]