2024-11-19 20:43:59, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_010323211 3468 bp RNA linear MAM 05-APR-2024 DEFINITION PREDICTED: Loxodonta africana NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X4, misc_RNA. ACCESSION XR_010323211 VERSION XR_010323211.1 DBLINK BioProject: PRJNA1092696 KEYWORDS RefSeq. SOURCE Loxodonta africana (African savanna elephant) ORGANISM Loxodonta africana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_087351) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030014295.1-RS_2024_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/02/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3468 /organism="Loxodonta africana" /mol_type="transcribed RNA" /isolate="mLoxAfr1" /db_xref="taxon:9785" /chromosome="10" /sex="male" /cell_line="Cultured endothelial cells from umbilical cord; passage 7" /tissue_type="Original tissue source of cells is from umbilical cord" /dev_stage="juvenile" /geo_loc_name="USA: Louisville Zoo, Kentucky" /lat_lon="38.2057 N 85.7071 W" /collection_date="2022-02-22" /collected_by="Austin Bow" gene 1..3468 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:100659618" misc_RNA 1..3468 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X4" /db_xref="GeneID:100659618" ORIGIN
ccgcgcggccggcgcgcgctcggaggcgccatttctgtagaggggagcggcggcgcagtctgcgaacatggcgctgttcccagcctttgcgggtgttagtgaggccgccgacagcgggagctccaggaaagaattagactggctgagcaacccaagcttctgtgttggaaccataataccaccgagccagcagctggaagaagccccaaaccttgttcctgaggggccaccactgaccaggagtcctttgaaatcagagccttcagatgaaagtgacactaacaaaaaactcaaacaaacaagcaggaaaaagaagaaagagaaaaagaagaaaaggagacatcagcaccacaagaaaaccaagagaaaacatgggcagtcgagtggcagcacatctgagccagatactgacgctgaaagggacaaatcttctagaagcaacagtaaaagggaatctgagaaaccaaatcaagaaaatcatgctgctgcagatattggacatcggtgtgtttggctggaggacattcaggctgcgacgggagaaaccttccgaacagataagaaaccagatcctgcaaactgggagtataagtctctctaccggggggatatagcaagatacaagaggaaaggagactcctgcctgggcattaaccctaagaagcagtgtatatcttgggaaggggctcccatggaaaagaagaattcacacaagcatgttgaacgctattttaccaagaagaacgtgggattgatgagcattgatggagctgctgttagcagtaaaaccgaacctccctcatctgaggcggcctcgtttataccagtgaaggactcggaggatgtggctccttccgtcaccacctggatgaaccctctggggatttacgaccattccaccacgcagtggttacaaggacagggccctttggagcaagagacaaagctgccagactcacagccagacagagagaatgctgttctcaaggccaaggtggaggaatttaacaggaagattcgggagaatcctcaggacattgagctgtggatggcatttgtcgcttttcaggacgaggtcatgagaaggccaggcctgtatgcccttgacgaaggagagcaggagaagcgaaagcggtccctgaagctcaccctggagaagaagctggctatcctggagcgggccatcgagagcaacccaagcagcgtcgacctgaaactcgccaagctgaagctctgcacggagttctgggagcccgccactctggtcaaagagtggcagaagctgatattcttgcaccccaacaatacagccctttggcagaagtaccttctattttgccagagtcaatttagcaccttctcggtatcaaaaattcacaatctttatggaaaatgcttgagtactttgtcttccgttaaggacggcagcatcttatctcatcccgtgttgcctggcactgaggaggccatgtttgctctctttcttcagcagtgccactttctgcggcaggctggccactcggagaaggcagtctctttgttccaggccatgattgacttcaccttcttcaaacctgacagtgtgaaagatctgcctaccaaaggacaggtggaattctttgagcccttttgggacagcggcgagccccgggctggggagaagggggcccgaggctggagagcatggatgcaccagcaggagcggggcggctgggtggtcatcaacccagatgaggatgacgatgagccggaagaggatgaccaggaaataagagataagaccctgcccaggtggcagatctggcttggtgctgagcgttcccgagaccagaggcattggcaaccttggcgccctgataagaccaagaagcaaaccgaggaagattgtgaggatccagagaggcaggtgttgtttgatgatattggacagtctctgatcagactctcaagcagagatctccagtttcagctggttgaagccttcctgcagttcttgggtgtgccttctggctttgcgcccccagtctcctgcctttatctggccatggatgaaaacagcgtcttcgttcacagactttctgatgaaaagccattgacttgttctaccccttcctttgccggcgtgggctgtgttggccgcatggaccgcttgggctgtcagcgctggagcagggggcacaaccgagagggcgaggagtttatccgtaacatcttccacctggtgatgcctttgttctcaggcgaggagaagtctcggctctgcttctcctggttacggcacgagacggcaaaggtcatttggtgtctgcaaactaaaaacaagaagaaattaaagtcacaaggaaggaactgcaaaaaactagccaagagtctcctgaaggagccagaaaactgcagtagtctgtgcctctggaggcagtatgcacatctggagtggctgctgggcaatacagaggatgccaggaaggtttttgatacggcactcagcatggtgggagccagggagctgaaggacgctgcgctctgtgagctcagtcttctgtatgcggaactggaggtggagctgctgtcggacttgagaggggccgccacgtccagagctgtccatgtactaaccaaactgaccgagagcggtccctacgggccctactctgggcaggtcttggctgttcacattctgaaggcccggaaggcttacgagcgagtgcttcaggactgcttggacgagagctgcatcccagacccagctcccaccgactcctttaactgcctggtcagcttggtcagatgctttatgctcttccagtacttgaccatgggcattgatgctgctgtgcagatatacgagcaggtatttacgaaactgaagggctctgtgtcccgtgaaggcactggcctggagcacagcggcagcccccggagcctggccagcgctctggaagctgtcacactgatgtacacgagtctgctccagttccacgtgaaagttagcgtttaccctctgacccctttgcgagaggcactctctgaggctttgaagttgtatccggccaaccaagctctttggaggtcatatgttcaaattcaaaacaagtcccacagtgccagcaagaccagaagattctttgatgcgatcaccaggtccaccaaatccttggagccttggttgtttgcaattgaagccgagaaaatgaggaaaagactggtggaaactgttcagagaaggtggagaagtacatgccacaatccctgagagcggcttaacaaaccgaatcaaagccctgtttgaacatgcgatccagagtgacaacggcagccagtgccccttgctgtggagaatgtacttgaactttttgtgcggtttcctcccccagttatctgacagtggcgggagttacgatgtcttaagaggtaccatttcgagggctgatgggctggagggagagaagaggaccctcttcagctcac
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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