2024-11-19 20:41:05, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_009818916 3634 bp RNA linear VRT 02-JAN-2024 DEFINITION PREDICTED: Colius striatus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, misc_RNA. ACCESSION XR_009818916 VERSION XR_009818916.1 DBLINK BioProject: PRJNA1057818 KEYWORDS RefSeq. SOURCE Colius striatus (speckled mousebird) ORGANISM Colius striatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Coliiformes; Coliidae; Colius. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_084764) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_028858725.1-RS_2023_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/28/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3634 /organism="Colius striatus" /mol_type="transcribed RNA" /isolate="bColStr4" /db_xref="taxon:57412" /chromosome="6" /sex="female" /tissue_type="lung" /dev_stage="adult" /geo_loc_name="Denmark: Copenhagen Zoo" /lat_lon="55.67256961 N 12.52133664 E" /collected_by="Mads Bertelsen" gene 1..3634 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:104559374" misc_RNA 1..3634 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X3" /db_xref="GeneID:104559374" ORIGIN
tgcgccccagcggcggttggggcggatagcagcggcagtaagctgagacatggcgttgttcccggccttcgccggggcccccgagcccggggagcccctagccggcagcagccggggcctcaggaaagaattggactggcttagtaacccaagcttctgtacaggagatgtactattactgaatcaaggcactacagaagatacagatctcaaccctgaaaaatcaccattaataaggactacttccaaatcagagttgtcaaaggaaagcgactcagatgagagtctgaaacagtcaagtaagaaaaggaaaaagaaaaaacatcaccactataagaagacaaaaaagaaaagcagaggggactccagtagcagtgaatcagacttggatgctaagcacatcaaggacaaaggtgcaggaagtggaagagatcataaaaaggaagtagcagcaaagcatttattgttctgtgctgttttctttagacttcttgttcatggtacatggagtctagataagaaagcatcaaaccttaccaacaatcgctttgtttggcttgatgatatccaggcttccacagcagaaaccttcagaatagacaagaaaccagaccctgcaaactgggcttacaaatccctgtatcgaggggacatagcaagatacaaaaggagaggagagtcatgtcttggcatagatgcaaagaaacaatgtgtaacttgggacagttctacgtccaaaaaaaagcaattacagacacgacctgagcgctatttcacaaagaacaatgtgaagatgctgaacacagatgggattcctgttagcaataaaagctctccatccgactcaactgcttttataccagttttagaaatggaaactgatgattcttccaacacaacaggagtaaatcctcttgggatttatgatccatcaacaacagtgtggctacaaggaaaaggcaagaatgcagaaaatgagcctgcagatacacagcaaccgattgaagagcccaggataaacattaactctagtctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatatcaatgcttggatggaatttgtttcttttcaggatgaactaatgagaggacccagcccttatgccagtaagggagagcaggacataagaagaaaatcactgaagttaatcttagaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgacctgaaactcgccaggctgaaactttgcacagaattctgggaaccaccagctttagtaaaagaatggcagaagctaattttcttacatccaaataatccagaactgtggaagaaatatctcctgttctgtcaaagtcagttcactaccttttcagtgtcaaaaatcaatagtctctatggaaaatgtttgactacattggcagctgtacaagatggcagcatggtgtctcatcctctgctccctggcacagaagaagctatgctaggtatatttattcagcagtgccactttctgagacaagctggccactctgagaaagcagtgtcattgtttcaggctctgattgacttcaccttcttcaaacctgacagcgtaaaagatttgccaacgagggggcaggtggaattctttgaacccttttgggatagtggagagccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctggattgttcttaagcctgatgatgatgatgaagaagacatagatgaggatgaagaaataaaggataagactctccccaagtggcatatttggttggatattgaatattctcgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtattatttgatgatcttggaccgtctttaatccggctttctaatccagatctccagtgtcaacttgtgtactcatttttgcaattcctgggaattccatgtacaagtaaactctttccttccaacctgtatgttgccatggatgaaaataacatctttgacagtgtgctttctgatgaaaagccactgacttctgttgattttccactttctggattcaacagtcttggtcatatggacacagtgctacgacggagacatcacataggccactataaagaaggagaagagttcatacagaatgtttttcatgttctgttccagctgttttcaggaaaggaaaaatctaacctgtccgtctgttggttacagtatgaaatatctaaggtagttcagtgtctccaagtaaaaaacaagaagaagctgaaagcacaagggaggaagagtaaaaagttggccaagaatctccttaaagcacctgacaaccgaaactacctctgtctctggaaactctatgcctacctagaatggttgcttggtaacattgatgatgctaggaaggtatttgacacagctctttgcacagcagggacaggaggattgaagagtccccagctctgcagcctcagtttgctttatgctcagctggaagtggaactcctagaaagtatagaaggagctgttatgtcacgtgctgttcatatattgaccaaattggctgaaagtggactatatgtgccctatagtggacaagtgttatctgtgagtgtcttgaaagctcgtaaaacttacgagcatgcactacaagattatttaagtagagcaccggtttctgatcaagatcagatcagtgatgccaatcagctggttaacgtggttggttgttatgcgctgttccagtatttgactgttggcattgatgctgcgttattaatatatgcacagactttggaaaaacttgaagctcctggtccacaaaaatgtgaaaatactggagagaattttggcattcagaattttcccactgcccttgaagctgtcacactgctgcatacaaatttactcagattccacatgaaaattagtttttatcctttgaatcctctttgcaaggcactaacggaggctctgaaacggtttcctagcaaccagtccctgtggaggtcgtatatccacatccagaggaagtctcacagtgctagcaaagcacgaagattttttgatgatgtcacaagatgtactaactctttagagccatggctgtttgccatccaagcagagcagatgagaaaaaaactcattgagactgtccagagggcagatgttggtgaaatacattctactattcctgaaactgggttaacaaatcggattgtagctctatttgaacatgcagttcagagtgaaaatggtgcccattgcccgctgctgtggagaatgtatttgagctttctgtgtggtagccttctctacaacaaggtgactagctcagtggatgaagggccagcagtggatgtttatctcacctttagcaagccttttccagtgtctccctaacaccattgtagacaagctgatgaggcatggattgggcttcactaggaaagaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggttctctacctggatg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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