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2024-11-19 20:41:05, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XR_009818916            3634 bp    RNA     linear   VRT 02-JAN-2024
DEFINITION  PREDICTED: Colius striatus NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X3, misc_RNA.
ACCESSION   XR_009818916
VERSION     XR_009818916.1
DBLINK      BioProject: PRJNA1057818
KEYWORDS    RefSeq.
SOURCE      Colius striatus (speckled mousebird)
  ORGANISM  Colius striatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Coliiformes; Coliidae; Colius.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_084764) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_028858725.1-RS_2023_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/28/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3634
                     /organism="Colius striatus"
                     /mol_type="transcribed RNA"
                     /isolate="bColStr4"
                     /db_xref="taxon:57412"
                     /chromosome="6"
                     /sex="female"
                     /tissue_type="lung"
                     /dev_stage="adult"
                     /geo_loc_name="Denmark: Copenhagen Zoo"
                     /lat_lon="55.67256961 N 12.52133664 E"
                     /collected_by="Mads Bertelsen"
     gene            1..3634
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins"
                     /db_xref="GeneID:104559374"
     misc_RNA        1..3634
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X3"
                     /db_xref="GeneID:104559374"
ORIGIN      
tgcgccccagcggcggttggggcggatagcagcggcagtaagctgagacatggcgttgttcccggccttcgccggggcccccgagcccggggagcccctagccggcagcagccggggcctcaggaaagaattggactggcttagtaacccaagcttctgtacaggagatgtactattactgaatcaaggcactacagaagatacagatctcaaccctgaaaaatcaccattaataaggactacttccaaatcagagttgtcaaaggaaagcgactcagatgagagtctgaaacagtcaagtaagaaaaggaaaaagaaaaaacatcaccactataagaagacaaaaaagaaaagcagaggggactccagtagcagtgaatcagacttggatgctaagcacatcaaggacaaaggtgcaggaagtggaagagatcataaaaaggaagtagcagcaaagcatttattgttctgtgctgttttctttagacttcttgttcatggtacatggagtctagataagaaagcatcaaaccttaccaacaatcgctttgtttggcttgatgatatccaggcttccacagcagaaaccttcagaatagacaagaaaccagaccctgcaaactgggcttacaaatccctgtatcgaggggacatagcaagatacaaaaggagaggagagtcatgtcttggcatagatgcaaagaaacaatgtgtaacttgggacagttctacgtccaaaaaaaagcaattacagacacgacctgagcgctatttcacaaagaacaatgtgaagatgctgaacacagatgggattcctgttagcaataaaagctctccatccgactcaactgcttttataccagttttagaaatggaaactgatgattcttccaacacaacaggagtaaatcctcttgggatttatgatccatcaacaacagtgtggctacaaggaaaaggcaagaatgcagaaaatgagcctgcagatacacagcaaccgattgaagagcccaggataaacattaactctagtctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatatcaatgcttggatggaatttgtttcttttcaggatgaactaatgagaggacccagcccttatgccagtaagggagagcaggacataagaagaaaatcactgaagttaatcttagaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgacctgaaactcgccaggctgaaactttgcacagaattctgggaaccaccagctttagtaaaagaatggcagaagctaattttcttacatccaaataatccagaactgtggaagaaatatctcctgttctgtcaaagtcagttcactaccttttcagtgtcaaaaatcaatagtctctatggaaaatgtttgactacattggcagctgtacaagatggcagcatggtgtctcatcctctgctccctggcacagaagaagctatgctaggtatatttattcagcagtgccactttctgagacaagctggccactctgagaaagcagtgtcattgtttcaggctctgattgacttcaccttcttcaaacctgacagcgtaaaagatttgccaacgagggggcaggtggaattctttgaacccttttgggatagtggagagccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctggattgttcttaagcctgatgatgatgatgaagaagacatagatgaggatgaagaaataaaggataagactctccccaagtggcatatttggttggatattgaatattctcgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtattatttgatgatcttggaccgtctttaatccggctttctaatccagatctccagtgtcaacttgtgtactcatttttgcaattcctgggaattccatgtacaagtaaactctttccttccaacctgtatgttgccatggatgaaaataacatctttgacagtgtgctttctgatgaaaagccactgacttctgttgattttccactttctggattcaacagtcttggtcatatggacacagtgctacgacggagacatcacataggccactataaagaaggagaagagttcatacagaatgtttttcatgttctgttccagctgttttcaggaaaggaaaaatctaacctgtccgtctgttggttacagtatgaaatatctaaggtagttcagtgtctccaagtaaaaaacaagaagaagctgaaagcacaagggaggaagagtaaaaagttggccaagaatctccttaaagcacctgacaaccgaaactacctctgtctctggaaactctatgcctacctagaatggttgcttggtaacattgatgatgctaggaaggtatttgacacagctctttgcacagcagggacaggaggattgaagagtccccagctctgcagcctcagtttgctttatgctcagctggaagtggaactcctagaaagtatagaaggagctgttatgtcacgtgctgttcatatattgaccaaattggctgaaagtggactatatgtgccctatagtggacaagtgttatctgtgagtgtcttgaaagctcgtaaaacttacgagcatgcactacaagattatttaagtagagcaccggtttctgatcaagatcagatcagtgatgccaatcagctggttaacgtggttggttgttatgcgctgttccagtatttgactgttggcattgatgctgcgttattaatatatgcacagactttggaaaaacttgaagctcctggtccacaaaaatgtgaaaatactggagagaattttggcattcagaattttcccactgcccttgaagctgtcacactgctgcatacaaatttactcagattccacatgaaaattagtttttatcctttgaatcctctttgcaaggcactaacggaggctctgaaacggtttcctagcaaccagtccctgtggaggtcgtatatccacatccagaggaagtctcacagtgctagcaaagcacgaagattttttgatgatgtcacaagatgtactaactctttagagccatggctgtttgccatccaagcagagcagatgagaaaaaaactcattgagactgtccagagggcagatgttggtgaaatacattctactattcctgaaactgggttaacaaatcggattgtagctctatttgaacatgcagttcagagtgaaaatggtgcccattgcccgctgctgtggagaatgtatttgagctttctgtgtggtagccttctctacaacaaggtgactagctcagtggatgaagggccagcagtggatgtttatctcacctttagcaagccttttccagtgtctccctaacaccattgtagacaagctgatgaggcatggattgggcttcactaggaaagaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggttctctacctggatg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]