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2024-11-19 20:24:06, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XR_009644992            3365 bp    RNA     linear   VRT 07-NOV-2023
DEFINITION  PREDICTED: Hemiscyllium ocellatum NRDE-2, necessary for RNA
            interference, domain containing (nrde2), transcript variant X2,
            misc_RNA.
ACCESSION   XR_009644992
VERSION     XR_009644992.1
DBLINK      BioProject: PRJNA1034606
KEYWORDS    RefSeq.
SOURCE      Hemiscyllium ocellatum (epaulette shark)
  ORGANISM  Hemiscyllium ocellatum
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;
            Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes;
            Hemiscylliidae; Hemiscyllium.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_083408) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_020745735.1-RS_2023_11
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 11/02/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3365
                     /organism="Hemiscyllium ocellatum"
                     /mol_type="transcribed RNA"
                     /isolate="sHemOce1"
                     /specimen_voucher="Juvenile #1654"
                     /db_xref="taxon:170820"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="spleen"
                     /dev_stage="juvenile"
                     /geo_loc_name="Australia: Clayton, Melbourne, Victoria"
                     /lat_lon="37.9105 S 145.1293 E"
                     /collection_date="2019-01-02"
                     /collected_by="Frank Tulenko"
     gene            1..3365
                     /gene="nrde2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins"
                     /db_xref="GeneID:132818425"
     misc_RNA        1..3365
                     /gene="nrde2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X2"
                     /db_xref="GeneID:132818425"
ORIGIN      
cggcctgtggagaatggagccgctgtcgggctccttgttcccggcgttcggtgtgagggaatcccgctgtgggagtgcctctgacggattggattggctcagtaatcaaagcttccgcactgaagatgccctgcaactgcaccatcgtatcgtgggcgatgcagcagacacaacccaggggtcaccccaggcaagtgatcattcagggataactgggggagttttggatcaaggcgaacaagatgcaccggccaaaaagaagaagaaaaggaagaaacatcggcagcacagaaaggataagaggaaggacagagcgattcacaccggcagcgaatctgatcctgaactcttccgagataaagactctgagactcctgcagagaggtctgacgccagtgctggtcttccccagggtcaattcatgtggctggatgacctccatctgcaaactgcacagaccttctgtatagacagaaaagctgatcctgccaactgggagtacaagtcactctatcggggagatttggcaaggtacaagaggtgtggggatgtctgccttggccttgactccagaaagcagcacattatctgggaagattcaccccgaccaaagaaaaaggccaggaagagggatgatcgatactacagctcatcgggccttcagttcctgagcactggctctgttcctgttcgctgtagagggtgtgtgcaaggaagcattcctgtgcctggtacagactccttcataccagttccagactgggcagagattgaaagtgaatccttaggcactgtcacctggttcaatccacttggaatttacgatgaatccaccgctttgtggctccagggaaaaggccgagaggagccggagaagcaatcctgcctgccctctgatagcagtgagaagataaactcggtaaacatggccaaagtggagacgttcaataggatgttgagagaagaccctgggaatgtccaaatgtggatggagtttgttcattttcaggatgaattaatgcaggacccaagtccgtacatgacctctgcagctgagtctgagaaacggaagagatcccgaagggctgtctgggagaaaaagctggccattttggaacgagccattgaaagcaatcccaacaatgtggagctgaaagtagcccggctggagctcggcaaagaatcttgggaaccatccaatctggtcaacgaatggaaaaaggtggtctttctgcacccaaacaacaccactctgtggcagaggtacctgctgttctgccagagccagttcagcaccttttcgacatccaaggtcaatggcatctatggcaagtgcctgagcaccctggcagctgctctggatggtaccctactgtcccatcctgcactgcctgacacagaggaagccatgtttgcaattttcctgcagcagtgtcacttcttgcgacagactggccactcggaaaaagccattgccctcttccaggctctcattgacttcaccttcttcaaacctgacagtgttgctggcctgataaccaaggcacaggtggagttctttgaaccgttctgggacagtgatgagccccggtttggagaaggaggggcaagaggttggagagtttggatgcgacagcaagaaaggggcggctgggttgtcctgaatgagaaaggcgacaatgaggatgaggaggaagatggggaggaggtcaaagacaagacactacccaagtggcagctttggctgcatgtggagagcagccgtgactccaagcactgtctgccatggcgagctgataaggcgaagggtcagactgaagaagactgtgaggatcctgacagacaggtgctgtttgatgacattggttcttcaatgttcaaagtatccagcccagaactgaggttccagctcatgtcatcgtttttccagttgctgggaattccaacaggattcagcctgcctccgtgctgcctgaatatggtgctggatgatcctagcttgtttgactgtggctcagctgatgagagacctctatcttgctgtcccactccagctgctggggtcagcaccatcggcttcatgccagcaatgcctaatgccaggcagccagtcagccactgcccagaaggggaggacttcatacaaaccgcgtttcaccaggcgttgcccctgttcgctgggaaagagcggtcagagctcgccctgtactggctgcagtatgaaaaatcaaaggtggtgaggagcctgcagctcaggagaaagaagcagccgaaatctctggggaagaggagcaagaaactcgctaaaaaccttctgaaggagggtgaaaaccggaacaatctgtccctgtggagggaatacgcccatttggaatggctgctggggaatgtggaggactcgagaagggtttttgacacggccattgctttgtctgtctctcagggcctgcagagctccaccctgtgtgacctctgcttcctgtactcctcactggagctggagtcagtgcagagcatcagtgcgtcaacaacaatgcgggcggtttatatcctcactagccttgccctgggtatcacctactcaccttacgcaggtgaggtgctgccagttaatgtgctgaaggctcgaaaaacatacgagcgatctttccaggacccgcctaacgacgacacagctttaaccggcagccagaggcctggccagctcatcagcctggtaggctgcttcgccctcttccagtacctcacgctgggcattcaggctgccgactcactgtacaggcaggcagctgaaaggcttgtaggcctctcctcgctggaaaaggcccaggccaagccgagcgtgtggcgacagagtgtgatgtgtgcgttggagaggctgactgtgatgcacgtgaggttgctgaggttccacatgcaggccagtgtgtatcccctgggccctgtccgccacacgctcacacacgctctgggccagtatcctggcagccaccagctctggaagctctacacgcaggttgaaagccgctctcacgatgccagccgagcccgaaggttcttcgacgccaccgcccggtcagcgccagacctcatcgtgccgcggctgtttgccatctacgcagaagagcggagaaaggagcgtgtcgacgctgtgcagagatcttgggattttgtacagcactctcccagaaaccggcctcaccaaccggatcagagcgctgtttgagcacgctgttcagacagaggctggcgcacactcggttttactttggaggatgtacctgaacttcacggtgactcaaggaaacattgagaagacaaagggtgtattttacagagcactgcaggcgtgcccgtgggcaaag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]