2024-11-19 20:24:06, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_009644992 3365 bp RNA linear VRT 07-NOV-2023 DEFINITION PREDICTED: Hemiscyllium ocellatum NRDE-2, necessary for RNA interference, domain containing (nrde2), transcript variant X2, misc_RNA. ACCESSION XR_009644992 VERSION XR_009644992.1 DBLINK BioProject: PRJNA1034606 KEYWORDS RefSeq. SOURCE Hemiscyllium ocellatum (epaulette shark) ORGANISM Hemiscyllium ocellatum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Hemiscyllium. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083408) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_020745735.1-RS_2023_11 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 11/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3365 /organism="Hemiscyllium ocellatum" /mol_type="transcribed RNA" /isolate="sHemOce1" /specimen_voucher="Juvenile #1654" /db_xref="taxon:170820" /chromosome="8" /sex="male" /tissue_type="spleen" /dev_stage="juvenile" /geo_loc_name="Australia: Clayton, Melbourne, Victoria" /lat_lon="37.9105 S 145.1293 E" /collection_date="2019-01-02" /collected_by="Frank Tulenko" gene 1..3365 /gene="nrde2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:132818425" misc_RNA 1..3365 /gene="nrde2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /db_xref="GeneID:132818425" ORIGIN
cggcctgtggagaatggagccgctgtcgggctccttgttcccggcgttcggtgtgagggaatcccgctgtgggagtgcctctgacggattggattggctcagtaatcaaagcttccgcactgaagatgccctgcaactgcaccatcgtatcgtgggcgatgcagcagacacaacccaggggtcaccccaggcaagtgatcattcagggataactgggggagttttggatcaaggcgaacaagatgcaccggccaaaaagaagaagaaaaggaagaaacatcggcagcacagaaaggataagaggaaggacagagcgattcacaccggcagcgaatctgatcctgaactcttccgagataaagactctgagactcctgcagagaggtctgacgccagtgctggtcttccccagggtcaattcatgtggctggatgacctccatctgcaaactgcacagaccttctgtatagacagaaaagctgatcctgccaactgggagtacaagtcactctatcggggagatttggcaaggtacaagaggtgtggggatgtctgccttggccttgactccagaaagcagcacattatctgggaagattcaccccgaccaaagaaaaaggccaggaagagggatgatcgatactacagctcatcgggccttcagttcctgagcactggctctgttcctgttcgctgtagagggtgtgtgcaaggaagcattcctgtgcctggtacagactccttcataccagttccagactgggcagagattgaaagtgaatccttaggcactgtcacctggttcaatccacttggaatttacgatgaatccaccgctttgtggctccagggaaaaggccgagaggagccggagaagcaatcctgcctgccctctgatagcagtgagaagataaactcggtaaacatggccaaagtggagacgttcaataggatgttgagagaagaccctgggaatgtccaaatgtggatggagtttgttcattttcaggatgaattaatgcaggacccaagtccgtacatgacctctgcagctgagtctgagaaacggaagagatcccgaagggctgtctgggagaaaaagctggccattttggaacgagccattgaaagcaatcccaacaatgtggagctgaaagtagcccggctggagctcggcaaagaatcttgggaaccatccaatctggtcaacgaatggaaaaaggtggtctttctgcacccaaacaacaccactctgtggcagaggtacctgctgttctgccagagccagttcagcaccttttcgacatccaaggtcaatggcatctatggcaagtgcctgagcaccctggcagctgctctggatggtaccctactgtcccatcctgcactgcctgacacagaggaagccatgtttgcaattttcctgcagcagtgtcacttcttgcgacagactggccactcggaaaaagccattgccctcttccaggctctcattgacttcaccttcttcaaacctgacagtgttgctggcctgataaccaaggcacaggtggagttctttgaaccgttctgggacagtgatgagccccggtttggagaaggaggggcaagaggttggagagtttggatgcgacagcaagaaaggggcggctgggttgtcctgaatgagaaaggcgacaatgaggatgaggaggaagatggggaggaggtcaaagacaagacactacccaagtggcagctttggctgcatgtggagagcagccgtgactccaagcactgtctgccatggcgagctgataaggcgaagggtcagactgaagaagactgtgaggatcctgacagacaggtgctgtttgatgacattggttcttcaatgttcaaagtatccagcccagaactgaggttccagctcatgtcatcgtttttccagttgctgggaattccaacaggattcagcctgcctccgtgctgcctgaatatggtgctggatgatcctagcttgtttgactgtggctcagctgatgagagacctctatcttgctgtcccactccagctgctggggtcagcaccatcggcttcatgccagcaatgcctaatgccaggcagccagtcagccactgcccagaaggggaggacttcatacaaaccgcgtttcaccaggcgttgcccctgttcgctgggaaagagcggtcagagctcgccctgtactggctgcagtatgaaaaatcaaaggtggtgaggagcctgcagctcaggagaaagaagcagccgaaatctctggggaagaggagcaagaaactcgctaaaaaccttctgaaggagggtgaaaaccggaacaatctgtccctgtggagggaatacgcccatttggaatggctgctggggaatgtggaggactcgagaagggtttttgacacggccattgctttgtctgtctctcagggcctgcagagctccaccctgtgtgacctctgcttcctgtactcctcactggagctggagtcagtgcagagcatcagtgcgtcaacaacaatgcgggcggtttatatcctcactagccttgccctgggtatcacctactcaccttacgcaggtgaggtgctgccagttaatgtgctgaaggctcgaaaaacatacgagcgatctttccaggacccgcctaacgacgacacagctttaaccggcagccagaggcctggccagctcatcagcctggtaggctgcttcgccctcttccagtacctcacgctgggcattcaggctgccgactcactgtacaggcaggcagctgaaaggcttgtaggcctctcctcgctggaaaaggcccaggccaagccgagcgtgtggcgacagagtgtgatgtgtgcgttggagaggctgactgtgatgcacgtgaggttgctgaggttccacatgcaggccagtgtgtatcccctgggccctgtccgccacacgctcacacacgctctgggccagtatcctggcagccaccagctctggaagctctacacgcaggttgaaagccgctctcacgatgccagccgagcccgaaggttcttcgacgccaccgcccggtcagcgccagacctcatcgtgccgcggctgtttgccatctacgcagaagagcggagaaaggagcgtgtcgacgctgtgcagagatcttgggattttgtacagcactctcccagaaaccggcctcaccaaccggatcagagcgctgtttgagcacgctgttcagacagaggctggcgcacactcggttttactttggaggatgtacctgaacttcacggtgactcaaggaaacattgagaagacaaagggtgtattttacagagcactgcaggcgtgcccgtgggcaaag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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