2025-04-21 01:50:44, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XR_002837545 4423 bp RNA linear VRT 03-FEB-2018 DEFINITION PREDICTED: Paramormyrops kingsleyae testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X9, misc_RNA. ACCESSION XR_002837545 VERSION XR_002837545.1 DBLINK BioProject: PRJNA432421 KEYWORDS RefSeq. SOURCE Paramormyrops kingsleyae ORGANISM Paramormyrops kingsleyae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Mormyridae; Paramormyrops. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019716010.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Paramormyrops kingsleyae Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4423 /organism="Paramormyrops kingsleyae" /mol_type="transcribed RNA" /isolate="PKING1" /db_xref="taxon:1676925" /chromosome="Unknown" /sex="male" /tissue_type="Fin Clip" /dev_stage="adult" /ecotype="Bambomo Creek, P0-Absent" /geo_loc_name="Gabon: Bambomo Creek" /lat_lon="2.16341666 S 11.46185 E" /collection_date="Jul-2009" /collected_by="Jason Gallant" gene 1..4423 /gene="topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:111840932" misc_RNA 1..4423 /gene="topaz1" /product="testis and ovary specific PAZ domain containing 1, transcript variant X9" /db_xref="GeneID:111840932" ORIGIN
gggaggagtggttgagtctgtctgggatactgggcagtttgtgaggctagaaacaacacgcaccgtgctgcacgtccaggcagcgtttaaaactgaagcgtgtactttactcaatagttatcatttacaaagttcatctgcgtgatactcgcagttgcttcgtcagtgtatagtttgtttactgttagttaatcaagatatacttttgaaagaaatgtccaaactaatttgatatttggtattgcaatgtaagagctagcagtttattcatgttgcatatcgcatatgcaaagaaatgccatattcccgttttactattgtaagtaatgtgttgaaaatgaacaattcccgttttttagtttctggtagttgcgtttttcccctaacagaatagttcatgttgttagtggttgtttgtgccaaattttgattcgcaatttggttttcaatgagaaagcatgaacaaaatgcagttatctggatcgagaagggtaagaattaaccgtactgttcttactaaagagagtagcaacgcatcggtcaagcggaggaggtcgtccttcggtggaaacgttaataatgccgagaacaagctaatccaaggcgacccctgtgcatctcacagaaattcaggtggcgatcagtgctcatcgcaagagaaaatgtcagacaagcccaatttaagacgcctgtgcacgtccaggtatgctcacgtatctaacacgtgtgttgtgcaacttataccgctggattccaagtctttgagtggatcatctccaaaacacatggacgtaagtttgcggagcactggtgaaggaggaccaggaacagctggaagaggaggtggatgcatatcagaaactgaagggaatgaaaccgttcagaagcaatccaccttgtgcttgagagattgttctatcaagaagcaggaaaaaaggcttattaaaagtccgtcctgtttcacgtgctgtgatgtgaagtttgccccctccaggtatgacagtctggccgtagtcaggtcatgtgacagcagggctaaagaaaccaccaaaaaacaaacctcaagaaagctggacagaaggacaggaaggaatcctgttgttaaactctgtaacatttcaaacattttcagtatccctgctgattttttgcattcgaggtgcatgttgccagaggaactaaaacgaaaaagcatccactgctttaagagagactgcagtgaaggtatgttactggagttctatccagcatcgcgtacgagtggtagggttaaccaaccccagccggggttacaagctgagacaaagtccactcttacatcccaagcccaaagacctaatgatgtagcagatatcctcacaaggactccttcaggagggaggtgtgacagacatgttttctgtgttgacacggaccctaatgctcatggataccgaatgacaaaccgaatgagagcgtccaacggatttagtcctctgatttccctgcccactgatgttctagagtctcatggcatggttccagtcatccagtccacaactgtatcatccagttgtgaaccaggagccctgcgtgagcctggtctaccctctggtgcagagatgatcaagagaagtgcaccaggtacaccaccgaatcggcaagatgcacatgaggaaagcagtctgttgatagcaggtggtggtcttgctatacggactatgcatgatcggtctgcggaatgcaaccgggataccagttgggaaggggaaggagaacttgactgggacatgactgagactttctcttgccaaagaacgaccccataccgaggatcactgtcctgtgcgcgtacatatatctcatggccttttcagaagttgcaaggatctggaaggggattcacagacaccagcactctacccctgatgcacgcaaaagccgaaagcgctcctgtgactgacgttcctgccaagttcagagctcctgactttgctaaagctgtggaatcggtaacagcagaaggcccagctagtggtacagaagtctgcatggaacctgaaatgctttctgaaatgaaattgggtctccgagaggacggttctgaatccgtaaagttagatgaaatggcagccaaaccggccctgccagttatttccttacaaacagaaccccagggcagttctggaggctgtggtcaccggtctaacaccctggattacaaggagcagaaaaatggaatctgtgagcccgagaaggttacaggtggacatttctgggagatgagtgtcacacagaaggtgaagctccagtgtttcaagatccctctgaagatggacacagaccaacctcagttccatccttctaaacagtctggtggtgtcgtcacaccatgcagagcggcagctggcaccaaagcactttcctctagcccaacatgtacaggaagacctcctggcgtgaagtcaaggccccttgcttcaccagagcgaagccggacttcaccgcttaaggttcctgctggctgcgatagtgatggcaacaccagcctgctctctgaagatgaggccggggactgcgtgcacccattggacggcgtcatcatgtgtgagataaaggactcttgcagcgctccgtaccgacagcctccttccctgggatccaactccagagtggagggggggacagaagatgcaatggacgtggtcaaagcatatgagcaggacgccatcgtcctggatgtgattcaggatgacccagaattgtttggcacaataacagaggaactcgtgtttggacagcagaagaaaccagagagaccactgcatgctaagaaaggtcaccacggaaacactgcaagaacctggaggagaataatctgggataagaaggagagctttaccgaaggcccagatccaacccagaagtacacagataagggagccttcatgcttgatataaacggagaaactaacagtgagacagtggtaagtgatggccaaccctctaacaccatggctggtgatgagcgccacctgctggcagaagagagcaaagcgggccccaccgatgatggagcaggcgaatggttatggacggatttcatgaccagtttccaggaagagcagtcgaagatgcatccggaaacctttgctcagcgagccgtgaattgcaccgcacagggggcccccggcggcggcttctcagtgaactgtgccgagagagagacctccaccactagggggagcactcccaacacagcaggtccagtaagtggtcctcctgatcgtgacgtttactgcaagtattacttcagcagcaagcacatgtgcttcaggaaggtctgctggttcctgcatgtgcctctagatggcgatgagcagttctgcactgaagtcatgattaggttcagcagagatgcaaatcagtccctcttacagcgtgcagctgctgtgtttgttagttactaccagaaatgtccacctgggatccattttgacctgcaagctttgaaacttctcctgtcggccctgttcaaacacggcatcatcaaagacgtgctctctgtcctgcgggttctcacgtcatacagaattctgccaccgtcggagttcatactggcgttgtttgatcacgtgagtcagtgttgcctccgtgtcgcgaccgcagacctcatggatgtcacgtccatggcaatgtgtggacgccggtctgcccttcacgcccgccgacttccagcacatgcagcgctgcctggagctgctcggcctgccggcgccgcagatgaacggcttcctggccttcaagctccggggcctggggacagacgcatggaaagtcagtggggaggtgcagctggccatagcagaggtggagcgctgcagggagcagggggattggaccaggatgggcaccgtcttctccagcctgtgtgcatcccagcacagcctggcagagctgcgacagctgagcggccgcgtggccctggctctgctcaaggactcggccgccgccccgctgcccttcgcccagttcgcgcaggccgtctgccagggcagctctgccaacggccttatcaacactctgattggccgaatcggggtttccttgatgttccggtactacggtgcgaagcagtggctgaagggcaggcagctgctggacaccctgaaggacttgaacattaactactccatgctgaatagcctgtttggcagcgagagcggcgcgtcccagggccgcacggtcagcgtggccgtcgagctcctcctgaacagcggcagcatggagagcgctctccagctgctcaaagataacgactggttgagcggctcctccccgcggccttgtgatgccaacacgacgcagatccgccaggccgtactgtgccagctggccgacagctgcgtacagaagggcgtccaccgggtggcgctagaggtgt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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