GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-19 22:25:39, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XR_002202878            5307 bp    RNA     linear   VRT 08-FEB-2017
DEFINITION  PREDICTED: Paralichthys olivaceus testis and ovary specific PAZ
            domain containing 1 (topaz1), transcript variant X2, misc_RNA.
ACCESSION   XR_002202878
VERSION     XR_002202878.1
DBLINK      BioProject: PRJNA369269
KEYWORDS    RefSeq.
SOURCE      Paralichthys olivaceus (Japanese flounder)
  ORGANISM  Paralichthys olivaceus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei;
            Paralichthyidae; Paralichthys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_017859657.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Paralichthys olivaceus Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5307
                     /organism="Paralichthys olivaceus"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:8255"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /breed="gynogenesis"
     gene            1..5307
                     /gene="topaz1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:109631856"
     misc_RNA        1..5307
                     /gene="topaz1"
                     /product="testis and ovary specific PAZ domain containing
                     1, transcript variant X2"
                     /db_xref="GeneID:109631856"
ORIGIN      
gctgtgtcagggacgtcgggcggagagcagcagttgtaacgagcctcacgtgaagtttaatggcagcgaggccgagggcgctttatttactgctcccacaggttaattgtcagcatgtttccgtccagcagcagagtgaagctcaaccgagtcgcgttaaaagacgctgtcggccctcagccgcactttccgcggcggaggcgagtctcaaggtcgccgacgaaagtttcagctgagcccgaaaaaccagaagcttctgagggaacctgcgcgagagacggcggcgacgaacccgtccagagctggttagcacggcgaggggacccgggcgatgcgggtgcggaggagccggagcactgctgcggaggaagcgctgaagagacgggaagaagaaaggtcatggagtcatgcagagagagtgatggagaagagttccaaccagagggacccgacactagagacaaaaataggaatacacacccaagccccactggttcacaggggtgttcgagaagaactgtttcagcctccagctgtggtccctgtggggactgtgaatacatttcccctcagaggaagacactggttaagaaggagcaaaaaagcagtagcccagggccagagcagtctgcagatgagttaaaaattaataaaggaaacccagtcactgatgcctctaaggagattgtcacatgggtagaccagtacgcaaaggtaacgctttgtgacatagcccaaaaatgtcacccatacagtcacaattgtggctatgtgttaccggatgttctcaagaacaaggttgtgcattgcttcaaacatgacatgacagatgttcagaaggaccctggaacactttatgaactcattggagcagagatttccagtaagaaaagaacaaagcttgggtatagcatgacaaaagaaagcatgccttccgacgctgattcaaaaaacattagttgcaatgacacagcaagaacttactttatagacaaagagaaaacatgttcggagatgtctggtaacagtcagtcatgtttggaactcacatttgggagctgcagcactcacacttcaactatgaaagaaaactgcgtccatgcgagacattgggttcagatagacaaacccagagaaagtgacgcagcacaaatgtcatcacaactgttctgtccgatgagcgaggcggatgcagatgaaccagagtcatccacctgccagagagtgagggtctatagcagaaaacaacatttttcttgtgcacggacatacatgtcttggcccttctctaacacaagccgtacccttacagcaaatactggcactacagcctgtcaagcagaacacattcatccatcagctagaaacaatagtgactcttcaataaatcaaattcagtcagcttcgctgagcagccaaactaatgatgtgctcccaaatgcacctgcagagacctcttcagacacaacccacaaggtttctcatcacaatgaagaaaaggaggatgtagggtgcattacagccaagagaaatgggaaaagagacagtcatatgtcttcatactcttcagacagcaataacatggagtttgaacctcactttatggacgctcaagaatcatttgccggtctgctctcagattcggccacactttctacctcaagtcagtgtgatagagcgcctggcactgacacagctttggccttaagcatgccagctaatggaccagataccgacagctccacgtctactccatccccctcagtgttaggcctgaatgactgggaaacaaccactactgcgtctcccacatcatttctgttcacacacagtggcttgagcccacattcagtgttcctacttgagaaagtcaaagctgttgagtcggcagaagctcgatctgcatgcacgtcaccggtgtcctcagtcaaacgagttatcagcgctgtagaaaaaccattgtttcacagtgaagaaactcaaatgacttcatgtccttcacctacatctccatttttttctttgcacaactgtgactcctgtcattcatgtcaatccttcctcctcctacctcaaggtaggcaagagggtgataaagagaaagaaattctcactgacaggagtccaccaaaactggagccatattataaccaaagccccatgaaccacaactatgctgttacttttggaagaggcagttcgtcattacaaaacattaccaaggaaaagtgtggcgaaactaattcaaatgaattcctgcttccaccacttctttctcctgtcgcttcaccgcaatggcacttgctcagaagctccttgccccagagacaatgctgtttagaggaggagatgaaaaatgacaacagtaaacacacaacactaccaggatatcacatgccacagattggtgaaggtgatcatcagaatggcggggagaattttgaccgtcatcaacatgaaggacacgcaaatgaggaaatggagggagcctcatcaaaatttaaaactatgaatgacgatttcagagagggaagccaggataacattgattatgaagatgacgtggaacagtctgacagatctttgtcagaaccctgctcttctcccagcagcgatgaaggatccccatctgaaacggtgggcagtgagaggcataaaactgaagcggaagcagctggtggtactgacagcagccttcttgatgagttcaccgcttatgaacgtgatatcttgcttgtcaatgtgatccctgacccagagctgtttgaaaatctacctgaggaaagtctgctaaagttgggtcctacaagagtcagtgatgcccctaaaaccagacctgctggagcagtgaaaactctattaccgagatggacaccaacagttattgtagatcttcacaatggcagtcctgatatcaaagaggagagtaacagcagaccctggagacctcaatgtaacagcaacctttccacaatcatgggtcattttgatgccaacaataatatgaactggagcctggaaaggagtcagcccgtccaggcagtgaaccccccacataacatctctgcacatatgatcttaagaaatgggccattgatcacaaaccgggcaaacatgacagaaattaggcgccataaatctactgtttactgcagacagtacttcagtgagtctctgtcctgtggattcaagatgtgtcgattcaagcatgtgcctgtggacggagatgaaaagttctgtgttgaaactgtgatgcggttcatccaaaatccaacgtgtgtccagaaagcaggtgctgtatttacaggctactaccagaacaacccaccaggtgtgttcttctccatgccagtgtttgtgtcactcctctggtccctgctcaaagcctgcatggtgtctgatatcctctcagtccttagtgtcagcttggctcataagatagcgcctggccatgagttcctgctggccctgtttgacttggtgagagagaagggccttgtgggatttttacctcaactcatgcggctcacattcaagatggccagtggaggtctagtgctgagtttggattggtttgaaagtataaaaattactcctgagttccagcaggcaatccgttcgaactctcctgtttcagtgactgccaacctcaatgctccctttccagagtacctgaatctggcccaatccattgtggagatagagctttgtacgaagcaggaggactggagacggatgggaaaggtgttcaggtccatctgccaatccagccatcatcccaaccaagtggaacaaatcagtggccgcatcgccatagctctcctgtcagagagcaaagacaagctgtcactgccctttgctacctttgctgagacagtgtgtccgagtgagggtgacaccctgatccagagtttttttggcagaattggagtctcactcatgctaagatatcacaaaacacatcaatgggccaagggtcggcgggtggtggagatgctgtccctgtcaaaagtcagatactcaacgctgaagggtttgtttgggaatgaagacggagcttcacgctgctacttggtcactgtggcaaccgagcttttcctcctgagtggcagtgtggagggggctctgaacacgctacgagaaaacaaatggttcctgagttcgcactcatggccatgtgagcctgcagatctggatagtaggaagcatgtgttgatgcgcctggctgagaaaacttctcatcgggacacactggaggttctctgtaatctccctggaattaaaatgccaaatgacttgattgatatctccaggtacggccctctgtttgactctcatctacgagtgtgcatggacagacaagtccttcctgtagcctcagatacagtagacttcatgctctctcacaacctggcagttgaccatgcgatgcttcagattcttttccacaaacttggcaagcaaaaccattggctccgtgcacgggaagtcttcagacactctctgagtgtggggtactaccctggtgtgtctgccccccctggtttcatggcgttgatcgtcccctgtcatctgggggaggtggagctggctcttgcctttgagatgttcatcgctgtcaatgcagcggccatcctccaaatttcagagaccaccacatcttgcctcagcatcactctgaaacggactcaaagcagcgagagtgagtacctcttagctggtagccgcctcctctctgcagcttgtatccctcagcccaagctaatggttcactacacagaagtgaactcttcacaggagcaagttttcacacttgacattttctctgctcgacgatggctccgccacaatcatttgtgggcaaatgaagtgtggacacattgacccgaacacggttgttttcctgcactccctggaagcacttgattgattttctttgtacgaagttttaataagaagttgttcttgtccaaaacgtttgcttctgttgtttttcttaacgtcacagactgaaatgcaactgtctgtgtttgtatggaggatgtgtttgtgatgtcaaaagatgatctctattttgcagttgccatagttacactcaacaggagtcatcagcgttgatgtccctgaagtcaaggtccatgcatccatgtgtcaggaaactgatttctggccacattagagtcaaccaatatcatccgtcacctccagtggccttttcctgttttgttgaagatatgtggtttacctcttcatgctgccgcacctgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtgtgtctgt
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]