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Previous release (v1)
2026-04-25 22:31:21, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XM_078237897 6536 bp mRNA linear VRT 22-DEC-2025 DEFINITION PREDICTED: Mustelus asterias protein argonaute-1-like (LOC144509276), mRNA. ACCESSION XM_078237897 VERSION XM_078237897.1 DBLINK BioProject: PRJNA1390264 KEYWORDS RefSeq. SOURCE Mustelus asterias (starry smooth-hound) ORGANISM Mustelus asterias Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Triakidae; Mustelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_135821) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_964213995.1-RS_2025_12 Annotation Pipeline :: NCBI Eukaryotic Genome Annotation Pipeline (EGAP) Annotation Software Version :: 10.5 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/19/2025 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6536 /organism="Mustelus asterias" /mol_type="mRNA" /db_xref="taxon:112232" /chromosome="21" gene 1..6536 /gene="LOC144509276" /note="protein argonaute-1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 long SRA reads, 57 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:144509276" CDS 81..2657 /gene="LOC144509276" /codon_start=1 /product="protein argonaute-1-like" /protein_id="XP_078094023.1" /db_xref="GeneID:144509276" /translation="
MEAGPAAAAAVGPYVPPLQQVFQAPRRPGIGTIGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTATLLPIGQDRVDFEVTIPGEGKDRIFKVSIKWLAVVSWRLLHEALVSGRIQVPLDSVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVPGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLVIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVRTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKSERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 183..575
/gene="LOC144509276"
/note="N-terminal domain of argonaute; Region: ArgoN;
pfam16486"
/db_xref="CDD:465134"
misc_feature 603..755
/gene="LOC144509276"
/note="Argonaute linker 1 domain; Region: ArgoL1;
pfam08699"
/db_xref="CDD:462567"
misc_feature 756..1118
/gene="LOC144509276"
/note="PAZ domain, argonaute_like subfamily. Argonaute is
part of the RNA-induced silencing complex (RISC), and is
an endonuclease that plays a key role in the RNA
interference pathway. The PAZ domain has been named after
the proteins Piwi,Argonaut, and Zwille; Region:
PAZ_argonaute_like; cd02846"
/db_xref="CDD:239212"
misc_feature order(912..914,957..959,999..1001,1011..1013,1065..1067,
1086..1088,1092..1094)
/gene="LOC144509276"
/note="nucleic acid-binding interface [nucleotide
binding]; other site"
/db_xref="CDD:239212"
misc_feature 1251..2528
/gene="LOC144509276"
/note="PIWI domain, Argonaute-like subfamily. Argonaute is
the central component of the RNA-induced silencing complex
(RISC) and related complexes. The PIWI domain is the
C-terminal portion of Argonaute and consists of two
subdomains, one of which provides the...; Region:
Piwi_ago-like; cd04657"
/db_xref="CDD:240015"
misc_feature order(1662..1664,1674..1676,1710..1721,1728..1730,
1752..1754,1761..1763,1773..1775,1785..1787)
/gene="LOC144509276"
/note="5' RNA guide strand anchoring site [active]"
/db_xref="CDD:240015"
misc_feature order(1866..1868,1872..1874,2082..2084,2496..2498)
/gene="LOC144509276"
/note="active site"
/db_xref="CDD:240015"
ORIGIN
tggagtcgctcctcgggggaggacgcggggctttgagccgttacacccggggaaatcggctctcacacgcggcctatgggatggaagcggggccagcggcagcagcagcagttggcccatatgtgccacctctgcagcaggtgttccaagcaccacgacgaccagggataggaacaatcggcaagccaattaaactactagccaactactttgaagtcgatattccaaaaatcgatgtttaccattatgaggtggatataaagccagacaaatgtccaaggagagtaaacagggaagtggtggaatacatggttcaacatttcaaacctcagatcttcggagacagaaagccagtgtacgatgggaaaaagaatatttatacagcaacactactgcccattggccaggatcgggttgactttgaggtgaccatccctggtgaaggaaaagatcggatttttaaggtttccattaaatggttggcagtggtgagttggaggttgctgcatgaagccctggtcagtggtcgaatccaggttccattagactctgttcaagcgctggatgtagctatgaggcacctagcatcaatgaggtatactcctgttggccgatctttcttctctccacctgagggttactatcacccgctgggtggaggtagagaggtttggtttggtttccatcagtctgtccgacctgccatgtggaaaatgatgttgaacattgatgtgtcagcaacagctttctacaaagcccagccagtgattgagtttatgtgtgaagtccttgacatccggaacattgatgagcaaccaaaacctcttactgactcacaaagagtgcgttttacaaaagaaattaaaggtttgaaagtggaggtaacccactgtggacagatgaagaggaaatatcgagtgtgcaatgtcacccggcgaccagccagtcaccagacgttccccttgcagctggaaagtggacagactgtggagtgcactgtagcgcaatatttcaaacagaaatacaaccttcaactgaaatacccacacctaccctgtctacaggtgggacaggaacagaagcacacctacctgccactcgaggtgtgcaacatagtacctgggcagcgctgcatcaagaaacttacggacaatcagacatcaacgatgattaaagcaacagctcggtcagcacctgacagacaggaagaaatcagtcgactgatgaagaatgccagctacaaccttgacccttacattcaagaatttgggattaaggtgaaagatgacatgactgaggttacaggtcgagttttgccagcaccaattttacagtatggtggtcggaaccgagctattgctactccaaatcagggagtgtgggatatgcgtggcaaacagttctacaatgggattgagatcaaagtctgggccattgcctgctttgcaccacagaagcaatgccgggaggaggtgctgaagagttttactgaccagctacgaaagatatccaaggatgcgggaatgcctatccagggccagccatgcttctgtaaatacgcacaaggagctgacagtgtggaaccgatgttcaggcatctgaagaacacctattcaggactccagcttgtcattgtcattctacctgggaaaacacctgtctacgctgaggtgaagcgagtcggtgataccctccttgggatggccacacaatgtgttcaggtgaaaaatgtcgtcaggacatctcctcaaacactctctaacctctgcctgaaaatcaatgtgaaattgggtggaatcaacaacatattggtacctcatcagcgttcggctgtgttccagcagcctgtgatcttcttgggagccgatgtcacacacccaccagctggagatggcaagaaaccctcaataacagcagtggttggcagcatggatgcgcatcccagccgttactgtgccacagtccgtgtgcagcgaccccgtcaggaaataattgaagacctttcctacatggttcgagagcttctgatccagttttacaaatctacccgcttcaaaccaacaaggattatcttctatagggatggcgttcctgaaggacaattgccacagatattacactacgagctcctggctatccgtgatgcatgtatcaaactggaaaaagattatcagcctggaattacctatatagttgtccagaaacggcatcacacacggctcttctgtgcagataagagtgagaggattggtaaaagcgggaacataccagcaggaacgacagttgataccaacatcacccacccatttgagtttgatttctacctgtgcagtcatgctggaattcagggcaccagcagaccttcacattattatgtcttgtgggatgacaatcgattcactgcggatgagcttcagatcctgacctatcagctatgtcacacttacgtgcgatgcacgcgctctgtctccattccggcaccagcctattatgccagattggtggcattcagggcaaggtaccacctggtggacaaagaacacgacagtggagaaggcagccacatctctggacaaagtaatggacgggatccccaggcacttgctaaagccgtgcaggttcaccaggacaccttacgcacaatgtacttcgcttaactgtgtgatagctcaaccacctcaacctgccagccttctggaccaaaagcagccatacaagaacattcaagcatcttccactgacatgtcttggaggttggaaggggtcatcatatattttacaatgagtagctttcaatgaactacaaatggactgggaaagactgatcaaacaaattatagaagaggtcaagctattctacatgaagaaaaccggattcacatttaagttttattttttacacgtatttatgcaatatattgataactttttaatgtaaaatgcaaacgttcaccactgccaaactcctgttagtttttcgagacacatggctaaaagaaaatggttgataagcaactacttcaaaggacatcttcaagggatgaaaagtcccataggtccaaaagctgaacttttcaatttagtgcctggacttatgattatttgaatctgcaagtctgttagacttgctagaatttcttttcgtgcatatgcctaaattggcaccaaaacatatcaatagttctcaacctgtttatgttctgtataatgtctcattctttattgttctttttgagtttcattttgacaagtgcagaaagctgtgtacttacacaatctgaaggaatcttaatgttatcatgtggtcactttccaaactctggattttgaaagttattatgcatttatggggggggggggagtaaaagtcctggacgtgaggcaggaaagaatggatcgcttgtaaattatttttttaaaatgttgcgataagaaccttaaaacattgtgatggctgcatttcatttttactgatattgtaagccactcctgctcagccctcttcctacagaaggggctgaaaatggccgcaaataaacaagtagattagagattatcagttttggcagaaagctgaattaataaagcaaaactggggtcttttaagagttgctattctttgaacaatcttgagctatccagcaaaagaattgcacactagctgaactcccactgtaattccccattgaagccactttggaaatagatgtagatgaacgaaaagcttagttttgtatctttttaaagggcattaaagattgagcattttttctgattttcctgtaaactgaacaaaagctatgcttgttatagtttttttaaaatgctttgttttggcccttagttggagttgaaagcctccttgcttcctcttgcccatacccagtactttattaaaaaaagaagaggtgattttgtactccagctgagaaatttcagtgctagtaaattgaagattttctggataattttgcaaccacccatatcaccctctgggcaaatatcacatgagcaagatgcactgtaaaagcttcctgcgttgttccctgattgtgtgaatgaacctcagcctcagggaatgttccccacctctacaggtttcatttgcatttcttaaactaacctgacagtggaactgccaaatagagttgtggcaagtttgtgctatgactcatatacgctttggcactaagttgcaactggccaaaacttacagctgaacccaagtctcagatgtaagagtggaatgttctaccttaccgcacaaccaagtcctacatgtagattttaatataaatgggatggttagtctgcataattttatattcactgttttgcactggaataaaataatcttaaacaagcacaatccaattgacaaatctgtcaacaattttcatgttaatgatacataaagcactacaaatggacagagaaaatacatctgcagtcaaaatatgacgcaaatgtaatcagtgggaggaaaccactaccaaggcattaaggagcatttgatagcccaggatttttacttggcttactttttttacttacctcattccctcttcaatcttcatccctcctcttaaggtgatgactcattgggatatggtccagaggggcaggctgtcctttcatatttcatgcaaggtgcctttattcatatctgaatgaagaaagtgagcattgacaagctattcaaatattgagggcattagaaccatgcacaaacccatcctttgttcaaattcactttgtagctgaaatcactccagagcaattaagaataagaccctggctgatttgccctatcccaacggaaaataaataacactcctacaatctaaaaatttaacatacaatcatccagcctgtatggtatagttacagtctgccttagccaacagctgtcatgggagcattttgtaacatttacttttttagaagcccattagaaacaacagcaccaaaattaattgctttgccttacaaataggtgcacgtttaaaattggcaaccgctggaagaagatcactagccacaccacctcgacctactctgtctcttacgctgggatataatggagctataaatgaaattcatcatgctacttagtgtgtctgttttctccacctgttgtttggcagctcctatacccagcaaaatttcacaatgaactccaattcagtctattctgatagtgcaagaactagttggcagccaatacataaatagataggaagccattaagagttgattccccatagaagactgatctgggattgacagtagttttaatcttgagcagaatgtgacagcagataaagatcatcaaccgcctctgcagtagaagcatgatgtctaatgtgcttaataataatactgtaaactttgtttacaatcacttttgtgtaaaatgtacaaaaatgtaacatactagaaatggtgacccaggtgtcacaggatgttgtttttacgtgcctacctgatttttagcttgactacataggaaggggaaaattgaagaaaatcagactgggctactttgcattatccccagttatctattgaagatagacacttgcaaagcctggagctcctcactaatattccctctgttacagaattatgtacaaaaggaaaagaaacaaattagcattaaaagcgcacaatattatttctctatgttgtcataaattgtggaataataagatgtaataacaatttacaaaaggtcattgactggacacctcttccttaaaccttagctcttcagccagttccgataatgaagacctttcctctttttatgtgtgtcatttgaaaatgacattgcaccttcctaatgacgcaaataaattatccagtgactagctgaactccagattcaacctctggtctatgttgaattagccaatcttgagtgggtactatagttaagtcagtgccaatgaattggggaggggaatgttgactgagatacttgtttctggtcactaccaatacttgctcgaaatgtatggggtatgggcaacaagatcaagtttggctgtggtacccttctcaaataaataacctgaagggtcaacttggacttgtggaacagtatcttcactggagtggttcaaaattggagagagggaagaataatgggaatttgtttttataacaagttgaatgatattcaagagaatcattggaaacatctacaatttggcagtattaactaagggcatgaggtgattagtacatcagattctcaccatatagtcagctgataattcatcaatcttaccatctgattggcctgggaaagtagaagctgagccccaggctacgtcggctatttcctgtttttaaaaaaagtagtcagctatgaccattgtcttggcgctgagagttatgctcaagtatttactgaggcagagtggtttattttcttacactgaaccaatatactgaagttaactctatttataattttctatgttccttttcctcgctgcacaagtgtttttaagaaataaaaagtgatt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]