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2026-04-25 22:31:21, GGRNA.v2 : RefSeq release 233 (Jan, 2026)

LOCUS       XM_078237897            6536 bp    mRNA    linear   VRT 22-DEC-2025
DEFINITION  PREDICTED: Mustelus asterias protein argonaute-1-like
            (LOC144509276), mRNA.
ACCESSION   XM_078237897
VERSION     XM_078237897.1
DBLINK      BioProject: PRJNA1390264
KEYWORDS    RefSeq.
SOURCE      Mustelus asterias (starry smooth-hound)
  ORGANISM  Mustelus asterias
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;
            Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes;
            Triakidae; Mustelus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_135821) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_964213995.1-RS_2025_12
            Annotation Pipeline         :: NCBI Eukaryotic Genome Annotation
                                           Pipeline (EGAP)
            Annotation Software Version :: 10.5
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/19/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6536
                     /organism="Mustelus asterias"
                     /mol_type="mRNA"
                     /db_xref="taxon:112232"
                     /chromosome="21"
     gene            1..6536
                     /gene="LOC144509276"
                     /note="protein argonaute-1-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 13
                     long SRA reads, 57 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:144509276"
     CDS             81..2657
                     /gene="LOC144509276"
                     /codon_start=1
                     /product="protein argonaute-1-like"
                     /protein_id="XP_078094023.1"
                     /db_xref="GeneID:144509276"
                     /translation="
MEAGPAAAAAVGPYVPPLQQVFQAPRRPGIGTIGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTATLLPIGQDRVDFEVTIPGEGKDRIFKVSIKWLAVVSWRLLHEALVSGRIQVPLDSVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVPGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLVIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVRTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKSERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
     misc_feature    183..575
                     /gene="LOC144509276"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    603..755
                     /gene="LOC144509276"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    756..1118
                     /gene="LOC144509276"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(912..914,957..959,999..1001,1011..1013,1065..1067,
                     1086..1088,1092..1094)
                     /gene="LOC144509276"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1251..2528
                     /gene="LOC144509276"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1662..1664,1674..1676,1710..1721,1728..1730,
                     1752..1754,1761..1763,1773..1775,1785..1787)
                     /gene="LOC144509276"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1866..1868,1872..1874,2082..2084,2496..2498)
                     /gene="LOC144509276"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
tggagtcgctcctcgggggaggacgcggggctttgagccgttacacccggggaaatcggctctcacacgcggcctatgggatggaagcggggccagcggcagcagcagcagttggcccatatgtgccacctctgcagcaggtgttccaagcaccacgacgaccagggataggaacaatcggcaagccaattaaactactagccaactactttgaagtcgatattccaaaaatcgatgtttaccattatgaggtggatataaagccagacaaatgtccaaggagagtaaacagggaagtggtggaatacatggttcaacatttcaaacctcagatcttcggagacagaaagccagtgtacgatgggaaaaagaatatttatacagcaacactactgcccattggccaggatcgggttgactttgaggtgaccatccctggtgaaggaaaagatcggatttttaaggtttccattaaatggttggcagtggtgagttggaggttgctgcatgaagccctggtcagtggtcgaatccaggttccattagactctgttcaagcgctggatgtagctatgaggcacctagcatcaatgaggtatactcctgttggccgatctttcttctctccacctgagggttactatcacccgctgggtggaggtagagaggtttggtttggtttccatcagtctgtccgacctgccatgtggaaaatgatgttgaacattgatgtgtcagcaacagctttctacaaagcccagccagtgattgagtttatgtgtgaagtccttgacatccggaacattgatgagcaaccaaaacctcttactgactcacaaagagtgcgttttacaaaagaaattaaaggtttgaaagtggaggtaacccactgtggacagatgaagaggaaatatcgagtgtgcaatgtcacccggcgaccagccagtcaccagacgttccccttgcagctggaaagtggacagactgtggagtgcactgtagcgcaatatttcaaacagaaatacaaccttcaactgaaatacccacacctaccctgtctacaggtgggacaggaacagaagcacacctacctgccactcgaggtgtgcaacatagtacctgggcagcgctgcatcaagaaacttacggacaatcagacatcaacgatgattaaagcaacagctcggtcagcacctgacagacaggaagaaatcagtcgactgatgaagaatgccagctacaaccttgacccttacattcaagaatttgggattaaggtgaaagatgacatgactgaggttacaggtcgagttttgccagcaccaattttacagtatggtggtcggaaccgagctattgctactccaaatcagggagtgtgggatatgcgtggcaaacagttctacaatgggattgagatcaaagtctgggccattgcctgctttgcaccacagaagcaatgccgggaggaggtgctgaagagttttactgaccagctacgaaagatatccaaggatgcgggaatgcctatccagggccagccatgcttctgtaaatacgcacaaggagctgacagtgtggaaccgatgttcaggcatctgaagaacacctattcaggactccagcttgtcattgtcattctacctgggaaaacacctgtctacgctgaggtgaagcgagtcggtgataccctccttgggatggccacacaatgtgttcaggtgaaaaatgtcgtcaggacatctcctcaaacactctctaacctctgcctgaaaatcaatgtgaaattgggtggaatcaacaacatattggtacctcatcagcgttcggctgtgttccagcagcctgtgatcttcttgggagccgatgtcacacacccaccagctggagatggcaagaaaccctcaataacagcagtggttggcagcatggatgcgcatcccagccgttactgtgccacagtccgtgtgcagcgaccccgtcaggaaataattgaagacctttcctacatggttcgagagcttctgatccagttttacaaatctacccgcttcaaaccaacaaggattatcttctatagggatggcgttcctgaaggacaattgccacagatattacactacgagctcctggctatccgtgatgcatgtatcaaactggaaaaagattatcagcctggaattacctatatagttgtccagaaacggcatcacacacggctcttctgtgcagataagagtgagaggattggtaaaagcgggaacataccagcaggaacgacagttgataccaacatcacccacccatttgagtttgatttctacctgtgcagtcatgctggaattcagggcaccagcagaccttcacattattatgtcttgtgggatgacaatcgattcactgcggatgagcttcagatcctgacctatcagctatgtcacacttacgtgcgatgcacgcgctctgtctccattccggcaccagcctattatgccagattggtggcattcagggcaaggtaccacctggtggacaaagaacacgacagtggagaaggcagccacatctctggacaaagtaatggacgggatccccaggcacttgctaaagccgtgcaggttcaccaggacaccttacgcacaatgtacttcgcttaactgtgtgatagctcaaccacctcaacctgccagccttctggaccaaaagcagccatacaagaacattcaagcatcttccactgacatgtcttggaggttggaaggggtcatcatatattttacaatgagtagctttcaatgaactacaaatggactgggaaagactgatcaaacaaattatagaagaggtcaagctattctacatgaagaaaaccggattcacatttaagttttattttttacacgtatttatgcaatatattgataactttttaatgtaaaatgcaaacgttcaccactgccaaactcctgttagtttttcgagacacatggctaaaagaaaatggttgataagcaactacttcaaaggacatcttcaagggatgaaaagtcccataggtccaaaagctgaacttttcaatttagtgcctggacttatgattatttgaatctgcaagtctgttagacttgctagaatttcttttcgtgcatatgcctaaattggcaccaaaacatatcaatagttctcaacctgtttatgttctgtataatgtctcattctttattgttctttttgagtttcattttgacaagtgcagaaagctgtgtacttacacaatctgaaggaatcttaatgttatcatgtggtcactttccaaactctggattttgaaagttattatgcatttatggggggggggggagtaaaagtcctggacgtgaggcaggaaagaatggatcgcttgtaaattatttttttaaaatgttgcgataagaaccttaaaacattgtgatggctgcatttcatttttactgatattgtaagccactcctgctcagccctcttcctacagaaggggctgaaaatggccgcaaataaacaagtagattagagattatcagttttggcagaaagctgaattaataaagcaaaactggggtcttttaagagttgctattctttgaacaatcttgagctatccagcaaaagaattgcacactagctgaactcccactgtaattccccattgaagccactttggaaatagatgtagatgaacgaaaagcttagttttgtatctttttaaagggcattaaagattgagcattttttctgattttcctgtaaactgaacaaaagctatgcttgttatagtttttttaaaatgctttgttttggcccttagttggagttgaaagcctccttgcttcctcttgcccatacccagtactttattaaaaaaagaagaggtgattttgtactccagctgagaaatttcagtgctagtaaattgaagattttctggataattttgcaaccacccatatcaccctctgggcaaatatcacatgagcaagatgcactgtaaaagcttcctgcgttgttccctgattgtgtgaatgaacctcagcctcagggaatgttccccacctctacaggtttcatttgcatttcttaaactaacctgacagtggaactgccaaatagagttgtggcaagtttgtgctatgactcatatacgctttggcactaagttgcaactggccaaaacttacagctgaacccaagtctcagatgtaagagtggaatgttctaccttaccgcacaaccaagtcctacatgtagattttaatataaatgggatggttagtctgcataattttatattcactgttttgcactggaataaaataatcttaaacaagcacaatccaattgacaaatctgtcaacaattttcatgttaatgatacataaagcactacaaatggacagagaaaatacatctgcagtcaaaatatgacgcaaatgtaatcagtgggaggaaaccactaccaaggcattaaggagcatttgatagcccaggatttttacttggcttactttttttacttacctcattccctcttcaatcttcatccctcctcttaaggtgatgactcattgggatatggtccagaggggcaggctgtcctttcatatttcatgcaaggtgcctttattcatatctgaatgaagaaagtgagcattgacaagctattcaaatattgagggcattagaaccatgcacaaacccatcctttgttcaaattcactttgtagctgaaatcactccagagcaattaagaataagaccctggctgatttgccctatcccaacggaaaataaataacactcctacaatctaaaaatttaacatacaatcatccagcctgtatggtatagttacagtctgccttagccaacagctgtcatgggagcattttgtaacatttacttttttagaagcccattagaaacaacagcaccaaaattaattgctttgccttacaaataggtgcacgtttaaaattggcaaccgctggaagaagatcactagccacaccacctcgacctactctgtctcttacgctgggatataatggagctataaatgaaattcatcatgctacttagtgtgtctgttttctccacctgttgtttggcagctcctatacccagcaaaatttcacaatgaactccaattcagtctattctgatagtgcaagaactagttggcagccaatacataaatagataggaagccattaagagttgattccccatagaagactgatctgggattgacagtagttttaatcttgagcagaatgtgacagcagataaagatcatcaaccgcctctgcagtagaagcatgatgtctaatgtgcttaataataatactgtaaactttgtttacaatcacttttgtgtaaaatgtacaaaaatgtaacatactagaaatggtgacccaggtgtcacaggatgttgtttttacgtgcctacctgatttttagcttgactacataggaaggggaaaattgaagaaaatcagactgggctactttgcattatccccagttatctattgaagatagacacttgcaaagcctggagctcctcactaatattccctctgttacagaattatgtacaaaaggaaaagaaacaaattagcattaaaagcgcacaatattatttctctatgttgtcataaattgtggaataataagatgtaataacaatttacaaaaggtcattgactggacacctcttccttaaaccttagctcttcagccagttccgataatgaagacctttcctctttttatgtgtgtcatttgaaaatgacattgcaccttcctaatgacgcaaataaattatccagtgactagctgaactccagattcaacctctggtctatgttgaattagccaatcttgagtgggtactatagttaagtcagtgccaatgaattggggaggggaatgttgactgagatacttgtttctggtcactaccaatacttgctcgaaatgtatggggtatgggcaacaagatcaagtttggctgtggtacccttctcaaataaataacctgaagggtcaacttggacttgtggaacagtatcttcactggagtggttcaaaattggagagagggaagaataatgggaatttgtttttataacaagttgaatgatattcaagagaatcattggaaacatctacaatttggcagtattaactaagggcatgaggtgattagtacatcagattctcaccatatagtcagctgataattcatcaatcttaccatctgattggcctgggaaagtagaagctgagccccaggctacgtcggctatttcctgtttttaaaaaaagtagtcagctatgaccattgtcttggcgctgagagttatgctcaagtatttactgaggcagagtggtttattttcttacactgaaccaatatactgaagttaactctatttataattttctatgttccttttcctcgctgcacaagtgtttttaagaaataaaaagtgatt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]