GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2026-04-25 22:29:55, GGRNA.v2 : RefSeq release 233 (Jan, 2026)

LOCUS       XM_077994948            4853 bp    mRNA    linear   PRI 09-DEC-2025
DEFINITION  PREDICTED: Macaca mulatta claudin 12 (CLDN12), transcript variant
            X3, mRNA.
ACCESSION   XM_077994948
VERSION     XM_077994948.1
DBLINK      BioProject: PRJNA1254774
KEYWORDS    RefSeq.
SOURCE      Macaca mulatta (Rhesus monkey)
  ORGANISM  Macaca mulatta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_133408) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_049350105.2-RS_2025_08
            Annotation Pipeline         :: NCBI Eukaryotic Genome Annotation
                                           Pipeline (EGAP)
            Annotation Software Version :: 10.5
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/25/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4853
                     /organism="Macaca mulatta"
                     /mol_type="mRNA"
                     /isolate="MMU2019108-1"
                     /db_xref="taxon:9544"
                     /chromosome="3"
                     /sex="female"
                     /tissue_type="cell line"
     gene            1..4853
                     /gene="CLDN12"
                     /gene_synonym="claudin-12"
                     /note="claudin 12; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 371 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 18 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:704058"
                     /db_xref="VGNC:VGNC:71244"
     CDS             23..289
                     /gene="CLDN12"
                     /gene_synonym="claudin-12"
                     /codon_start=1
                     /product="claudin-12 isoform X2"
                     /protein_id="XP_077851074.1"
                     /db_xref="GeneID:704058"
                     /db_xref="VGNC:VGNC:71244"
                     /translation="
MLPAAGGPVDSGNCSPSHPGHYRSGPRENLTALPEASGVPLWERTSWDAERETLQEAPQCGRVKCPACEKQAQIIATVYSDLHVYLLS"
ORIGIN      
aaaggcaggaggtggtcgcaggatgttgcctgcggctggcggcccagtggattctgggaattgtagtcccagccatccagggcattaccgttcagggccacgggagaacctgactgcgctcccagaagcctccggtgtgcctctctgggaacgcacttcctgggacgctgagagggagacgctccaagaggctcctcagtgtgggcgagtaaaatgccctgcgtgtgagaagcaggctcagattattgctactgtgtattcagatctgcatgtttatcttctaagctgaataaagttgttttggaactgtcgggtacctcaaaggtataggacacagtgaacaaaacaaagggatctctgtcctggaattcacagtctgatgggaaagaaaacaacactgaacaaggaattataagaacgatcactgctacagaagaaaaagtgcaaaaatgctaccacagcatataaccaggggtggggggaggtttagggcaagcctccctggatactagaagaatgagtaaatattagccaagcaaataataggttggaattaagaaagttctaggagaaagaccatgagggaaggcccttaaccgaattagaaagcgaaaaatttgggaagttaaaagaaaggtggtgtggctgcatagactgtagtgtgtagggtggaagagtggcacataagaaggttgagaatttggtaggaatcaggtggtgtaagctatggggaggattggaaactttagagactttattctgtgggaaatgggaacttattgaatggtaagaaatggaatggcggatgaggtttgcatttgaaaaaaattattgtggattaaaactaaatgacacaggacaagagtagtctttttacccttgcaagtatgaacaaatcctaatctggaagtcagcattatctttgttttaaaacatcaaacgtattctttccccaaactatcctataaaattttactttaggcatgctggcttacttttgtaatcccagccctttgaaaggctgaggttgggggattgcttgagcccaagaagtcaagaccagcctgggcaacatagcaagaccccatctctacagaaaacctaaaagttagcctggcatggtggcatgcacctgtaatcccagctactcaggaggctgaggcaggaggattacttgagcccaggatctcagctcactgaaatctagtgagctgtgatcatgccctgcactccagcttgggtgatagagtaagaccctgtcttaaaataaattactttctctttctcgttggatatataacttatcaaaccataagcatgtgaaattaagaacagggcataaaagcgaagtagccaaaagaagctacaaggagctagacattaattccagcatcaggccaaaatttagcttaagaattaagctaaaggttaatagtacttcccttctgagaaagtgccatggtatccttgttgactctgtatagataggcctttgtccatccctgagatctgagctaaaaatgcttcatcaaaggcaatttcagagaaccaatataatatttgtattgatttgatgcagattacagttaaaagcacttcatactgaaatatatattgccccacctctcttcattaatgtcatttgatagtctataggctaagaattataggaatttatttttcttaataattaattttcttttttttttggtagagattgggtcttgctatgttgcccaagctggtctcaaactcctgggctcaagctatcctcccaccttagcctccccaagtgctgggattacaggcatgagccacagcacctggcctggaatttattaataatagagttatacatcctgatcttgtttctccatttacatttcaggaatcagtgttacagggcagtttgattggagaaatctcaattacattgaaattccaattatttctatactacttctgttttttgttgctgtttgttttgagacagagtctcgtgctctgtcgcccaggctggagtgcagtggtgtgatctaggctcactgcaaccgctacctcccgggttcaagcgattctcctgcctcagcctcttgagtagctgggattataggcacgtgccaccatgcctggctagtttttgtgtttttattagagacggggttttaccatgttgaccaggctggtctcaaactcctgaccttaagtaacctgcccgccttggcctcccaaagtgctgggattacaggcatgagccaattcgcccaggcagtatactgcttctgaaagcaagaaggaattgtgattgcattaggactttgagtgggttatctgaagacttctgaagcttgagagaaacagagggaacctttttcttatgtcttcacaactttaatcaaatccttattctccttcatttctcagtctttaactcctggctgataaatttttatgaataggtaccttattcactttgcttaacacctaacaataatcacttgatatgtagtaattatacagttgattcaccaccagcactttaagtttacataaaacagctgtttctttccacaagcctgtctgtagacacattgggggcaaggttcaggtctcagtggtcttggtatttttccagggcctaagtttacataaaacaactgtttttttccacaagtctgtctatagacacattgggagcaaggtccaggtctcagtggtcttggtgtttttccagggcctaacagagtgttttgtgtatgctagacactcagcacgatgtaagtacttgttgaataaatgattgcttcttactaataactacttccttgtacagttcttcattaccagtggcccacctttgtgagttactggggtctttgtacagagcccactactcgtttattcaaataatcctagaatcacttgtgtgccaggcacacaagttgtatgggggcgataggtgaataagcaaagaccaccagagagctgtatcctagactttggcatctctagtagctttttccagtgcaaacattctcaaatctgtactagtttccattgctgtactgaggtgtttggttgccacaattaagcaagacaactttttcccagtttgcatggaaaaaaatactgtaatttgtctctccctttcataaaattttcttaaacaattgctacttctaataatattgacagaaggtaacataataaatagtaaactaatactaatggaaaaacttagaactaaccatgtttaacttgagagctttaaaaatggttacttgtggttaaactctgattttatattgtacatttatatatgctttgtatatatttgaatatatatgtatgtacacataggcatttttttggttagtaaaattattctggctgggcgcagttgctgatacctataatcccaggttgtcatttcagcacttttggaggccaaggcaggaagattgcttgaggccaggagttagagaccagcctggccaacatggtgaaaccagttctctaaaagaaggaaaaaaagaatgggaagaagaattggggggggtggaaggagggaggagggctggttcacacctgtaatctcagtactttgggaggctgacgctggtggattgcttgagcacagtttgagaccagcctaggcaacatgacaaaaccctgcctctacaaaaaaacaaaaaacaaaaattaacatagtgacatgtgcctatggtcccagctactcaggaggctgaggtcggaggatcgcttgagcctggggggtcaaggctgcagtgagccatgattgtgtcactgcactctagcctgggcaacagggtaagacttgtttcaaaaaaaaaaaaaaaaagaagaaaaaaaagaaaaaattattcctgtattatatgactagattaaatatgcaaataacattgttttctaaagaacattgtgcccttccactggaattcatgagaatcacattctaagccagcttcctagcattttggtcataattgtctttctgatcctaaaaacttagaaacaaacttcaccatcccagcagataatacttgattctgcaaaggatgatggaactgtatacagaaataaaaattattctcaaccttgccccttcatcatgctctgaccaaaaaaagtaaaccttattgaagtagtctgctctatttcctcatagtagatattatagaaggcagagaaaaaacatttgagtcgtgcttcgagagtgaatatcagacccttgaggaaattaaagctgaatataatgcaagctttttatagtttgtcatatacagaaaaagaacatggccttttaatttgtaatgaaagtcctggtgactgtttttcttataatagcattaatagaaataggttgtcattacttgaaaaacgtttgcattcatcttatatgaacagtagtagtaataacaaacaagtgctgtagatttccctgaaaagcacttgggtcatcttgaatcaacaaggaagtaattaagcagaataatttcaggtaccaatgttctcatcttttcatttgactgactcattggagatgagctcatttactttttataatttcctcgtgtgcctagtacataggaatgagatcagtttgatttttcttatttaacattcattcaatgaatgttctttgaactgctctgatgtgcttggcatcacatcagatgcaaagtgatgagctgggtcactgaacgctaagaagtagttaacacttggcgtagcatttattatgtcctagacatgttttaagcactcaacattatattatctcattgaacccatagaacaaccctgcgaggttggcactgttattctttcca
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]