LOCUS       XM_077990596            3720 bp    mRNA    linear   PRI 09-DEC-2025
DEFINITION  PREDICTED: Macaca mulatta claudin 1 (CLDN1), transcript variant X2,
            mRNA.
ACCESSION   XM_077990596
VERSION     XM_077990596.1
DBLINK      BioProject: PRJNA1254774
KEYWORDS    RefSeq.
SOURCE      Macaca mulatta (Rhesus monkey)
  ORGANISM  Macaca mulatta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_133407) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_049350105.2-RS_2025_08
            Annotation Pipeline         :: NCBI Eukaryotic Genome Annotation
                                           Pipeline (EGAP)
            Annotation Software Version :: 10.5
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/25/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3720
                     /organism="Macaca mulatta"
                     /mol_type="mRNA"
                     /isolate="MMU2019108-1"
                     /db_xref="taxon:9544"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="cell line"
     gene            1..3720
                     /gene="CLDN1"
                     /gene_synonym="claudin-1"
                     /note="claudin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 12444 long SRA
                     reads, 10 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:704330"
                     /db_xref="VGNC:VGNC:71242"
     CDS             684..1319
                     /gene="CLDN1"
                     /gene_synonym="claudin-1"
                     /codon_start=1
                     /product="claudin-1 isoform X1"
                     /protein_id="XP_077846722.1"
                     /db_xref="GeneID:704330"
                     /db_xref="VGNC:VGNC:71242"
                     /translation="

MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGVIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDYV"

     misc_feature    696..1202
                     /gene="CLDN1"
                     /gene_synonym="claudin-1"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; pfam00822"
                     /db_xref="CDD:395662"
     polyA_site      3720
                     /gene="CLDN1"
                     /gene_synonym="claudin-1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

agcccagtccttcttccactgggaaacgctgtttacatgccctcacctgtgacgaacagcatgtgataactcacaaaattaacatctttcagggagagcggggcaccgaccaggtctctctgataatgaattgctgcctaagacataactgctgtgggcaggaggtacagtgcatagtaatttttggataattggagtgaatgaatgaaaagcgcgaaacgcctgacaggagcgggaagatccaccagagaaaacgagcagggacgcagctgtagtgcctggtcctgcgggatggtccccacgccaccagccgcgtgttcccccaacccggcgctcccggcgccctctcggtgagccgccctgaaaccgccagggggcgctccccggctgccggggccgaggcgggcggagctgctttaaatcgcggcgcccagcggtttggcgtctcagttcctgagcctgggagcaaccgcagcttctagtatccagactccagcgccgcccgggccccggaccccagcccggacccagagcttctccagcggcggcgcagcgagcagggctccccgctttaacttcctccgcggggcccagccaccttcgggagcccgcgttgcgcacctgcaaactctctgccttctgcacctgccacccctgagccagcgcgggcggccgagcgagtcatggccaacgcggggctgcagcttttgggcttcattctcgccttcctgggatggatcggcgccatcgtcagcactgccctgccccagtggaggatttactcctatgccggcgacaacatcgtgaccgcccaggccatgtacgaggggctgtggatgtcctgcgtgtcgcagagcaccgggcagatccagtgcaaagtctttgactccttgctgaatctgagcagcacattgcaagcaacccgtgccttgatggtggttggcatcctcctgggagtgatagcaatctttgtggccaccgttggcatgaagtgtatgaagtgcttggaagacgatgaggtacagaagatgaggatggctgtcattgggggcgtgatatttcttcttgcaggtctggctattttagttgccacagcatggtatggcaatagaattgttcaagaattctatgaccccatgaccccagtcaatgccaggtacgaatttggtcaggctctcttcactggctgggctgctgcttctctctgccttctgggaggtgccctactttgctgttcctgtcctcgaaaaacaacttcatacccaacaccacggccctatccaaaacctgcaccttccagtgggaaagactacgtgtgacacagaggcaaaaggagacaatcatgttggaacaaactgaaaatggacattgagatactatcattaacattaggaccttagacttttgagtattgcaatctgaagtatggtattacaaaacaaacaaagaaacccatgtgttaaaaatacctattgctaaacatggcttagtcttattttatcttctttcctcaatacaggagggaagatttttccatttgtattactgcttcccattgagtaatcatactcaaatgggggaagggggtgctcttaaatatatatagatgtgtatatatacatgtttttctattaaaaatagacagtaaaatactcttctcattatgttgatactagcatacttaaaatatctctaaaaataggtaaatgtatttaattccatattgatgaaaatgtttattggtatatttttttgtttatgtatacatatataatagtcaaatatcatttactcttcttcattagcttttagtgtctttgccataagacctagtctaatctaccaagaatgaattctttcaattcttcatgcgtgcccttttcatatacttattttattttttaccataatcttatagcacttgcatcgttattaagcccttatttgttttgtgtttcattggtctctatctcctgaagctaacacatttcatagtctacattttagtttctaaagccaataagaatttattacaaatcagaactttggaggcaaatctttctgcatgaccaaagtgataaattcctgttgaccttcccacacagtcctcgtactctgacccatagcattcttgtttgctttgaaaatatttgtccaattgagtagctgcatgctgttcacccaggtgttgtaacacaattttatggattgaattatgaagctacttattcatacttatatatcccacctaaactacctttttgttccccttccttaattgtattgttttcccacatgtaattatcatgtagtttatatcttcctaataaggtgtggtctgtttgtctgaacaaaatgctagactttctggagtgataagctggtgacaaatattctctctgcagctgtaagcaagtcacttaatctttctacctcttttttctatctgccaaattgagataatgatttaaccagttagaagaggtagtgtgaatattagtttatattactctcattctttgaacatgaactatgcctatgtaatgtttttatttgctcagttggctgtttagaagtcactgaacaaaacctacacacacaccttcatgtggttcagtaccttcctctctctatcagtctatttccattctttcagctgtgtctgacatgttgtttgtgctctgtgccactttaacaactgctcttacttttccagtctgtacagaatgctatttcactcgagcaagatgatgtaatggaaagggtgttggcactggtgtctggagacctggatttgagtcttcgtgctatcaatcactgtctgtgtttgagcaaggcatttggctgctgtacgcttattgcttcatctgtaagaggtggtttgtaattcctgatctgcccacctcacagtgatgttgtggggatccagtgagatagaatacatgtaagtgtggttttgtaatttaaaaagtgctacactaagggaaacaattgaggaattaactgcatacgtgttggtgttgcttttcaaatgtttgaaaagaaaaaaaaaattaagaaatgggtttcttgccttaaccagtctctcaagtgatgagacagtgaagtaaaattaagtgcactaaaccaataagattctaaggaagttttatcttctgcagtgaggatggcccaatgtttttcgtggctgagcagatgtaatgggaagaaataaaagcctaagtgttgctaaatccaacagcaagggagatttttgaatcataataactcataaggtgctatctgttaagtgacgccctcagagctcttgctgttagctggcagctgacgctgctaggatggtacttcacaataaactacacaaggaaagtcagccaccgtgtcttacgaggaattggacctaatacattttagtgtgccttccaaacctgagaatatatgcttttggaagttaaaatttaaatggcttttgccacatacatagatcttcatgatgtgtgagtgtaattccatgtggatatcagttactaaatattacaaaaaaattttatggcccaaaatgaccaaaaaaattgttataatagaattcatccaattttgatatttttatattcttctaccacacctggaaacagaccaatagatattttcgggttttataatgggaatttgtataaagcattactctttttcaataaattgttttttaatttaaaaaaa

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