2024-11-19 20:18:56, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_067363243 1758 bp mRNA linear VRT 19-AUG-2024 DEFINITION PREDICTED: Chanodichthys erythropterus vimentin like (viml), mRNA. ACCESSION XM_067363243 VERSION XM_067363243.1 DBLINK BioProject: PRJNA1148501 KEYWORDS RefSeq. SOURCE Chanodichthys erythropterus (predatory carp) ORGANISM Chanodichthys erythropterus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Chanodichthys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_090236) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_024489055.1-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/16/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1758 /organism="Chanodichthys erythropterus" /mol_type="mRNA" /isolate="Z2021" /isolation_source="lake" /db_xref="taxon:933992" /chromosome="16" /tissue_type="muscle" /geo_loc_name="China: Hulun lake" gene 1..1758 /gene="viml" /note="vimentin like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins" /db_xref="GeneID:137003188" CDS 133..1470 /gene="viml" /codon_start=1 /product="vimentin like" /protein_id="XP_067219344.1" /db_xref="GeneID:137003188" /translation="
MSTSSYRKRFGDASRSSAFSSRQTSSLMRSQVSFGVSSAPVIYAAKSSRVRSSAAMPRLSSDTVDFNLSDALNKEFKVNRLNEKAQMQSLNDRFASYIEKVRFLEQQNKILCAELEQLRGQRSSSIADLYEEEMRDLRRQVDQLTTEKARVEVSRDNMAEDIERLREKLQNEILQREDAENSMRSFRQDVDSAALARVDLERKVESLQDEIAFLKKLHDEELAELQAQIQGQQVQVDMDMAKPDLTAALRDVRLQYENLASKNIQESEDWYKSKFADLTEAANKNNEALRLAKQEANEYRRQVQALTCEVEALKGTNESLERQMREMEENFGMESSSSQDNISRLEEDIRNMKDEMSRHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPLPNFPSFSLREAMVESKPTENIITKKVLIKTIETRDGQVINESTQNHDDLE"
ORIGIN
tcctccagcagcgttatgcgatttgcataatgacttgactataaatgaagcttcctctcaaactgtcgctccccgttttggacagttcctgaagacagaaacgcagagctacaacagatattaaagttcacgatgtctacgtcctcgtacagaaagcgatttggagatgcgagccggagcagcgcgttctccagccgccagacgtccagtctcatgcgctcgcaggtgtctttcggcgtctcctcggctccggttatttacgcggcgaagagctccagagtccgaagtagcgcggcgatgccacgactgagctctgacacggttgactttaatctctcggatgccttaaataaggaattcaaggtgaatcgtctcaatgaaaaggcgcagatgcagtcactaaacgaccgcttcgccagttacatcgagaaggtgcgtttcctggagcagcagaacaagatcctgtgcgcggagctggagcagctgcggggtcagagatcttccagcatcgctgatctctatgaggaggagatgcgagacttgaggcgacaggtggaccagctcaccacggagaaagcacgcgtggaagtgtcgcgagacaacatggcagaagatatagagcgactcagagagaaactgcagaatgagattcttcagcgagaagatgcagagaacagcatgaggagtttcagacaggatgtggacagcgctgctcttgctcgagtggatctggagaggaaggtggagtctctccaggatgaaatcgccttcctgaaaaagctccacgatgaggaactggctgagctgcaggcacagatccagggccagcaggtgcaggtggatatggacatggctaaacctgatctgacagctgctctgagagacgtcagactgcagtatgagaacctggcatccaaaaacatccaggagtcagaggattggtacaaatccaagtttgctgacctgactgaagcggctaacaagaataatgaagctctacgattggccaagcaggaggccaatgaataccgccgacaggtgcaggcgctcacctgcgaggtggaagcactcaagggaacaaatgaatctctggagcgtcagatgagggagatggaggagaactttggaatggagtcttctagttcccaggataatatctctcggctggaggaggacatacggaacatgaaggacgagatgtcaagacacctgcgtgagtatcaggatttgctcaatgtcaagatggccctggacatcgagatcgccacctacaggaaacttctagagggggaggagagcagaattacaactcctcttccaaatttcccctccttcagtctgagagaagcgatggtcgagtccaagcctactgaaaatataattactaagaaagttcttattaagaccattgagaccagagatggccaggtgatcaatgagtccactcagaaccatgatgatctggagtgatggagggaaatctcctaccattatcatccactgcaaaccaccagctgcagcacctttttgtatcccaactaccaacctaatctaatgtgaacaacccacattaacctgcttcaaagtgcctttttatctgccaaaaatataccttaagtatttgagccagtagaggacctgtagtttcgctcagagtgagaacacatgacctttagcgtactgtgaatcttttcattgtctgaacctgcatttatcttccccacagcatttctgagccaacatgcttcaataaaaata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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