2024-11-19 20:36:25, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_066851271 3396 bp mRNA linear PLN 31-JUL-2024 DEFINITION Apiospora aurea NRDE-2- necessary for RNA interference-domain-containing protein (PG986_015049), partial mRNA. ACCESSION XM_066851271 VERSION XM_066851271.1 DBLINK BioProject: PRJNA1140273 BioSample: SAMN32709951 KEYWORDS RefSeq. SOURCE Apiospora aurea ORGANISM Apiospora aurea Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Xylariomycetidae; Xylariales; Apiosporaceae; Apiospora. REFERENCE 1 (bases 1 to 3396) AUTHORS Sorensen,T. TITLE Analysis of 21 Apiospora genomes using comparative genomics revels a genus with tremendous synthesis potential of carbohydrate active enzymes and secondary metabolites JOURNAL Unpublished REFERENCE 2 (bases 1 to 3396) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-JUL-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3396) AUTHORS Sorensen,T. TITLE Direct Submission JOURNAL Submitted (16-JAN-2023) Department of Biosciences and Chemistry, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_027117398). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3396 /organism="Apiospora aurea" /mol_type="mRNA" /strain="CBS 24483" /culture_collection="CBS:24483" /db_xref="taxon:335848" /chromosome="Unknown" gene <1..>3396 /locus_tag="PG986_015049" /db_xref="GeneID:92084333" CDS 1..3396 /locus_tag="PG986_015049" /note="consensus disorder prediction; NRDE-2_ necessary for RNA interference" /codon_start=1 /product="NRDE-2- necessary for RNA interference-domain-containing protein" /protein_id="XP_066692360.1" /db_xref="GeneID:92084333" /translation="
MSSSKQGQKSSRVPTFSSFKPKTTEAAVVPANDQGRSERNTKEQDRKESHQPKEGRSRSHHHRSDRHSSPRQHDEHGGRSDGKRSRHHDDERSPPSRESLDLPRRSTAVASSEASSRDNFVVDKRGDPLIRRYGGNNRYDVPAYRRYGRGHILGADGLIRVEQLGSRDEFTIRGFYEGGGGGSALNSGRKHPLAGSRRAGAEVVRVRAEKAATYTGSEDFLPLGGAGSSKKRKRPESDASGASSDEEGPSYRSIHGKSKPHEFSDSDEEYGSDAAGESRARDLDDPIKARTVQLSQHTRQHPEDIDAWLALVDHQDTLLHIKDRDGRRPTPAEVRSFADIKLSMLEKALSHCTSPEQRETLLLRTMVEGAKIWDAKALARRWEDVVREHSSSFAIWKAYVDFRQTSLSGLRYEDMKLLYISKMQQIKAALHAQGSEPVDQDLYAQLVIVFTRLTRFVAESGYYELAAASWQAILELHFCRPTSMAEGDNTNNNTRTVPPSFQGFWESEVARIGEDSAKGWAAFDTNGGTEEPPEPIAFDNGTTLHTRDPYKAWAAAEQHRSSHARVPARTMDEGTEDDPYRVVMYTDIEDFLFYVPHSALQFAQEQLISAFLIFHQLPPAPGSGSLSDLLVRDGLLDTNGLIHSGGKKQDLSETPETEGAANKPLEFPQSHQRISPSTEVLFPPTAAWFNYLGSAVRALTNDGQLQLVSNTLKQLARSRGRSDLAAYHLAFDICSPKTDGKKAAKALLTKYPTNIDLYIGYANYEFRAGNHTVASNVITAALQLPSLSYEEKLQLSTAWTWMALEHGDLATSLSRLCLAGQETQSTVTEPTSPAWILKTRQTLTSNCEYSTSQGNATVASLYAKALVLLQYLTQQSGKEPRGEGQGDIETAMAVVAKCSDEFKARGLAADAGHERLLQFAAQLLYVHISHGPYRPAFLREQAAAFLGFFPDNTLFLTLFGWKETRLSIDDRVRSLLTDVVLTKPHDGASARVFAIRHEMRSGNAHSTRAAFEHALEDSPGSKHNVGLWVSYTRYCRETKELRPKAKEVFYRAIQRCPWSKEVFMEAFGTLVRDLDSAELRSVYSTLYEKGVRVHVEMDEFVGRWKEEARQRDQQRDQQSHSHRPTAGRSRR"
ORIGIN
atgtcgtcgtccaagcaggggcagaagtcatcgcgtgttcccacgttctcgtcgttcaaaccaaagacgactgaggcggcagtggtgcccgccaacgaccaaggccgctcggagagaaacaccaaggaacaagataggaaagagagccaccaacccaaggaaggaaggtcgcggagtcatcatcaccgcagtgatcgacactcaagtcctaggcagcatgacgagcatggcggcagatccgatgggaagcgatcgcgccaccatgacgatgaacgatcaccgcccagcagggaaagcctggatctcccgcggaggtcaaccgccgtggcttcttctgaagcatcttccagggacaacttcgtggtcgataagcgcggggacccactgatcaggcgatacggtggcaacaatcgctacgacgtcccggcgtaccggcggtacgggcgcggtcacatcctgggcgccgacgggctcatccgcgtcgagcagctggggagtcgggacgagttcaccatccggggtttctacgaaggcggcggcggcgggtccgcactcaatagtgggcgcaagcatccgctggcaggttctcgtcgcgccggggcagaggtcgtcagggtacgagccgagaaggcggcgacgtacactggttccgaggatttccttccactgggcggcgccggctcttccaagaagaggaagagacccgagtcagatgctagtggcgcatcttccgacgaggaggggccgtcgtaccgatccatccatgggaaatccaaaccgcacgagttctccgacagcgacgaagagtacggcagcgacgctgctggagaatctcgggcgagggatctagacgaccccatcaaagcaaggaccgtgcagctgtcgcagcatacgagacaacacccagaagacatcgacgcctggctggcattggtagaccaccaggataccctgctgcacatcaaagaccgagacggccggagaccaacgccggccgaggtccggagctttgccgacatcaagctctccatgctggagaaggccctgtcgcactgcacatcgcccgaacagcgggagaccttgctcctgcgcaccatggtggaaggggccaagatatgggacgccaaggccctggcgaggcgctgggaggatgttgttcgcgagcacagctccagctttgccatctggaaagcctacgtggatttcaggcagacgagcctgtcgggtctgcggtatgaagacatgaaactgctgtacatcagcaagatgcagcagataaaagctgcgctgcacgcacaaggatcggagcctgtcgatcaagatctatatgcccagctcgtcattgtctttactaggttgacccgcttcgtcgccgagagcggctactacgagctcgcagccgcatcctggcaggcgattctcgagctacacttctgtcgcccaacaagcatggctgaaggtgacaacaccaacaataacacaaggacagtgcccccgagcttccaaggcttctgggagagtgaagtggcccggataggcgaggactccgccaaaggttgggcagctttcgatacgaacggtggtacggaagaacccccggagccaatcgcctttgacaacggcactactttgcatacccgggacccctacaaggcctgggcggcggcggaacagcaccggagctctcatgccagagtcccagcccggactatggatgaaggtaccgaggacgacccgtaccgagtggtcatgtacaccgatatagaggatttcctcttctacgtgccccacagcgcgttgcaattcgctcaagaacagctgatctctgccttcttgatattccaccaactcccgcctgcgccaggctccggcagtttaagcgatctactggtccgagatggactgctcgacacgaacggcctgattcactctggcggcaagaagcaagatttgagcgagacccccgagaccgaaggcgccgcaaacaaaccccttgaattcccccagagccaccaacggatcagcccgagtaccgaagtgctcttccctccaacggcggcgtggttcaactacctgggctcagccgtccgcgccctcaccaacgacggccagcttcagctggtttccaacaccttaaaacagctcgctcgctcccgtggccgtagtgacctggcggcgtatcatctggcctttgacatctgcagtcccaagaccgacgggaagaaggcggccaaggccttgctgacgaaatacccgaccaatatcgacttatacattgggtatgccaactatgagttccgtgcgggcaaccataccgttgcttccaacgtcattactgccgcgctccagctgccaagtctttcttacgaagagaagctccagctttctactgcctggacatggatggcactcgagcacggcgatctggctacgagtctgtccagactctgtctcgccggccaagagacccaatccactgtaacggagccgacttcgccagcatggattctcaaaacccgacagaccctgacctcgaactgcgaatactcaacttctcaagggaacgctaccgtcgcctcgctctacgccaaggcgctggttctgctgcaatacttgacccagcagagcggcaaagagccgcgtggagagggccagggcgatatcgaaacggccatggcggtcgtcgcgaagtgctcggacgagttcaaggcccgggggcttgcggccgatgctgggcacgagcggctgctgcagttcgcggcgcagctcttatatgtgcacatcagccatggaccataccgccccgccttcctccgcgaacaggccgcggccttcctgggcttcttcccggacaacaccctattcctcaccctcttcggctggaaggagacgcggctcagcatagacgaccgcgtccgctccctgctgaccgacgtcgtgctaacgaaaccgcacgacggcgcctcggcccgggtcttcgccatccggcacgagatgcggtccggcaacgcgcactcgacgcgggccgcgttcgagcacgccttggaagatagtcctgggtctaagcacaatgtagggctgtgggtctcgtacacacggtactgccgcgagaccaaggagctgcggcccaaagccaaggaggttttctaccgggccattcagcggtgcccgtggtccaaggaggtgtttatggaggcgtttgggacgttggtccgggatctggattcggcggagctgcggtcggtttatagcacgctgtacgagaagggggtgcgcgtgcacgttgagatggacgagtttgtggggaggtggaaggaggaggccaggcagcgggatcagcagcgggatcagcagtcacatagccacaggcctacggcgggtcgtagtcgtcggtag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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