LOCUS       XM_066715068            5891 bp    mRNA    linear   VRT 23-JUL-2024
DEFINITION  PREDICTED: Amia calva vimentin-related 2 (vimr2), mRNA.
ACCESSION   XM_066715068
VERSION     XM_066715068.1
DBLINK      BioProject: PRJNA1136883
KEYWORDS    RefSeq.
SOURCE      Amia calva (bowfin)
  ORGANISM  Amia calva
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Holostei; Amiiformes; Amiidae; Amia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089859) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036373705.1-RS_2024_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/19/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5891
                     /organism="Amia calva"
                     /mol_type="mRNA"
                     /isolate="fAmiCal2"
                     /db_xref="taxon:7924"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood, heart, muscle, misc"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Vacherie, Louisiana"
                     /lat_lon="29.929889 N 90.747444 W"
                     /collection_date="2023-03-15"
                     /collected_by="Ingo Braasch, Allyse Ferrara"
     gene            1..5891
                     /gene="vimr2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins"
                     /db_xref="GeneID:136759927"
     CDS             44..1174
                     /gene="vimr2"
                     /codon_start=1
                     /product="type III intermediate filament"
                     /protein_id="XP_066571165.1"
                     /db_xref="GeneID:136759927"
                     /translation="

MLRVSSYRRLFEEEQWSSGCMVQCGAQDRASARAVSADWQLEELDFEVARALSRESLSQCVKERSLIAALNDRLAYLIDTARSLEEENETLEAQILELEGRLSSQAATRSTGRGMEGCSLAAVVEALRKEKEQILSDIRERQKELHLQQQMFEQASEQRCLMQLKREDIAMAVDAVTAECLALRDQVAIYEDQLAWMQEQQEQRIETLGAPGDGVPVVSLEFPCPDVSPTILDIKAYYSQLAQSLQFESKQAAITMGEDEGPGDSRAKAAHIAQVKEIDKLKKRISELQRELAELQRRGEELQGEIEAWDDEHQEEIAQLENCVSELEDSRGVLELEMKQQSDDYEQLLSEKMALDIEITAYRGLVEDEVERLCYL"

     misc_feature    230..1159
                     /gene="vimr2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
     polyA_site      5891
                     /gene="vimr2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

cccgtgtttgcctactgcttgtgtccctgccttgttgtggatcatgctgagagtgtcttcataccggcggctgttcgaggaggaacagtggagctctggctgcatggttcagtgtggggcgcaggaccgtgcttctgccagggcggtttcagcagactggcagttggaggagcttgatttcgaggtagcccgtgccctgagcagggagagtctgtcccagtgtgtgaaggagcgtagtctgattgcagcgctcaatgaccgtctggcctatctcatcgacacggcacgcagtctggaggaggagaatgagactcttgaggcccagatcctggagctggagggcagactgagcagccaggcggctacccgttccactgggcggggcatggagggctgcagtctagctgctgttgtggaggcactgcgcaaggagaaggagcagatcctgagtgacatccgtgagcggcagaaagaactccatctccagcagcagatgttcgagcaggcatctgagcagcgctgtctgatgcagctgaagagggaggacatcgccatggcggtggatgctgtaactgcagagtgcctggcgctgagggatcaggtagccatctatgaggaccagctggcctggatgcaggagcagcaagagcagcgcattgagactctgggtgcccctggtgatggcgtgccagtggttagcctggagttcccttgccctgacgtgagccccaccatcctagacatcaaggcctactacagccagctggcccagagcctgcagtttgagtccaagcaagctgccattacgatgggtgaagatgaaggcccaggagactccagagcgaaagcggcacacatcgctcaagtgaaggagatcgacaagctcaagaaacggatctcggagctgcagagagaactggcggagctgcagaggcggggtgaggagctccagggggagatagaggcgtgggatgatgagcaccaggaggagatcgcacagctggagaactgcgtgtccgagcttgaggattctcgtggggtcctggagctggagatgaagcagcagtctgatgactacgagcagctgctgagtgagaagatggccctggacattgagattaccgcctacaggggtttggttgaagacgaggtggaaagactgtgctacctgtaactgaccgagcttcagaactggaggtgggggagaggttcggacttgggctcaattaattattgctgtagaggaagagaagagaaaaaacacaaactaatacttaagagtcaataataaaaaagctttaagccatgcaacagttgaagtacatatattaattttgacagatttatctgagaactggaaatccttgtaatgtcattgatggcaggtcacaggaaatctagcctcatgcttttagaagaaaaacatcagtgtgtaagtgatgtgataaaatggagtaaggtgggagtaggatgctgcatgggtgtagagagaattacttgtgatcttctgaacaagaatccttgctggttagattaggactctccccagggctccctatcttcatgtgcctgtgtgtgaggacctctcttattgatcctggcattaattcagcatccagattgcctctctctgtctatgatgtatggctgctgtgaagtctcatccttcctggcattctgggcaatattaatgaatcctcaggcaaattgagacagatagacgcagtgcactacacttaaactttgctctgtctggaagttgtaacacatctttcatttccagattagattcctgatgtccagaatgacaactcagttcacatacatttgtttgaaagccctggattaccaagtgtttacaaggatgctttgacgtgttgtgcacattcatcagatggtcgctgtcctggcaatcaagtgtagatgggttttcagtaggattgccatcacttcatgataagccttccttatggcagttgattagtaagtcgacctgaacttagaaatctgtgatgactcgggctggactttgaaaatacagaaccaactttgttgaaactttgctgttttgttcattgtgcaagacaatctatgctctccataattttgaacaaggacgctatagtaaacaagctgcaaccccctctcatgctttctataggattgattcctttacttcatgacagactttgaaatttggctattttacgccgttttatgcattctctttcgtctctgtaggctttcatcacccattaattgtgagcatctgatggcagattagagccttttaagctttacataaagtacaaaaaatgcagttaatatatggcagataagattatccttagaaagtgaactccgcttgcctgcagtgttaacccttgcagagtatgcaagctcaggcttgctgatctatctgactgagctgacgcctttaattctgtggacatgaaacacggctgccatgggaggaagccagtctgtctctgtgtctcgccggccccattgctcattcatctccacaacttcacagagctgctccctcacaatttatcttcccccgaaaccctgtgtgtggatgaatgtgtctgatacccctttgccccctcttagtccctgagccccaaacccccccccccccccccacaccagaggttgttatttagtcatatgttgtgtgcagtgagaggggaaagtaagagctgtgattgataccgagaggagaggggacatggcgactcggaggccaggtcaagcgctttgagaagattagtgttttgggttttaaagaagcaggctacccgccgtgcccgccgtaagacactgagcaaatatgttttacttttagagcaattttggagaggtgctctgctgatacttatttgtattagttttaattattattattaaacaaaactccagtctgtaaagccaaataatacaatacagtggagactttggggaatttcaagtcctataccatctgaatttcctggtatatatttatttttcctaattcaaaaggtttgttttggtcggtttgcttcctatattttaacctacaaggttgaacacaaatgtaggactgtggttgattaatgcgaaaacaaatgcagcctaagatttacattgtattaaactctagtctttgacaaaagctgtgtgctgtccactgtgtgttataagcacagcactttataatgtttataagacacaaattatatagtaacaacacggagacattcgggtcagtttttgcatgagtcacagtgagaattactataaggatgtaaatatttagggtagaggtacaagctcagccaaatttaagtcctacagatacagattttgttttaccctggagatcacaaatttaaatggaaaaataaaatactttgttgggaaatcaatttaaggctgattaaaccccaatagccagttcttagtattgtaacttgcagcacctaacctctcacattttgtctttctcttattttccaatgatttaagattgtgggtaagattctgttaacccttggtttggcctgtgacattgggaggcctatgctgccctagacttttaggcctgatgctcttgatttggcctgtggtcatagttgtgttctgggtcagtggtcagtgaccgatacagcctttttatcaagtcgctgtttgtgggcactgagaaaggggggctgtgggaacaccaaagtggcaacacaaaaatccttgtcctccatttcttactgttatcacagctgcaacacctggataatattatacagtatcaaagtgccaaataacaccttcaggcttcaagtgtttgctgttcattggggaaaaagcagagaagaaaacaaaaacaaataagggaataggaattcattatgcaatacattgtgttgaaacataagtgttatcagttgaattttacaaaaaggaaaaacaaatcctgttgtaatatactgtatctgttcttaagatattataaaggtggtgagagatgatttgaaaaaatcatttggtctgcacataattaaatttcggagtattcttgcaaaacagtgatatttcgctattatacatgaactggtaccacaatttatgtcctgtataaacacaatgagcttctattcttagagactgattggagcttttgaaagtgaagaatgttttttctgtggctacatgcaatatgtctgaagaaattcagaattgcaaatccgtaatggtagttgtgaccctaacagcttgtgtgtttgacctctgtgttcatctaataacactgatacgaaccttatctccatcacagaaaaaataaactcttaggctgaagttggtggtggtctaggggagaacgaaacgattgactttttttcccctctgcactgctgtgtgacaaaacccggccaggcgggtgtttatagaacaaataaatacgtagaggggaaatcaagggagagaaaacgtctgtaaaaacatacaaaggagagaagcaattgagaaagtatttccttaacaagagagctggaataaaaaaattttgcctgcttgttcctctgggaggtgtggaacagatttgagtgatgtcaagctgtcctctctctctctctctctctctctctgtgtgtgtgtgccctcccaccagagttgaggtcataatttgcttttcgttacctgtcttgcagcaaagcactgggggggaaagaaaaaacttacctgcctaaagttacctgccccattttaacatcaaataatatcagcatgaacacaaaccatagccaacctcaaaatttcaagctaggcccacacaaatctacacccgattcagttaccttggtagaaaagcaacaaagtttaaccctaatttatttataatcgcatggccggtgtggctgtcccacattaccgtcagatgttgtgatttagtcttgaatatgtatataccagcttgacgacacctttggccatctttgtcctgaagctagttgtgttggacacgtgtgcttgctgcttatcatgcatgtttttagcaggtgggtctgcatgtcaacatttaaaccccccacccccccacccactcccacccactaatatgttgatgaccttagcatttctcctgtttgtgcatttgtcaacacagtaacagatggagtcaaaacacctccatctgacacatccatgctgacaccgcacatgtgctttgcagaagtcccggaggcagcgctgtggggtttgatgcagctttcatgtttttttcttcaaattccccaactcttctcaatcgcaccattggcagcattagtagtgtcactctacagcatgaagtaatcacactggtatgaagcttcttgccccccctccacccccatattggcgggagtgaagctagcagtgctcagggggaagctgtgaagaacatcatctacaaaaggatgttcaaatggcctttcccagaattgtaaacctccttctcaaagagttaaaatgagtcaaagttcatcatgggtggtggtgttgttgggttgggaatgtgtcctattgaagaagcatcattcctattcctataaatcacactgcctcgctctcatgctctctctcagtgacaatggggtggttctctctttggtacgagggctatacagtttcacccagttatttattgaaacttaaatcatttagccttagagtatcatgactgggggtctgtgatcttgcaagagttatgaaaaccttcacctctgaccccaagggctttcactttcttgatgcgggaattaaacttaatgaaagatgttgttcatttcttaaaacaataaatctcagtgccaatacatttcctatagaactgtttggataaggagttattaaaacactgtgagccctga

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