LOCUS       XM_066694759            2143 bp    mRNA    linear   VRT 23-JUL-2024
DEFINITION  PREDICTED: Amia calva Meis homeobox 2a (meis2a), transcript variant
            X6, mRNA.
ACCESSION   XM_066694759
VERSION     XM_066694759.1
DBLINK      BioProject: PRJNA1136883
KEYWORDS    RefSeq.
SOURCE      Amia calva (bowfin)
  ORGANISM  Amia calva
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Holostei; Amiiformes; Amiidae; Amia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089870) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036373705.1-RS_2024_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/19/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Amia calva"
                     /mol_type="mRNA"
                     /isolate="fAmiCal2"
                     /db_xref="taxon:7924"
                     /chromosome="21"
                     /sex="female"
                     /tissue_type="blood, heart, muscle, misc"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Vacherie, Louisiana"
                     /lat_lon="29.929889 N 90.747444 W"
                     /collection_date="2023-03-15"
                     /collected_by="Ingo Braasch, Allyse Ferrara"
     gene            1..2143
                     /gene="meis2a"
                     /note="Meis homeobox 2a; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 16
                     Proteins"
                     /db_xref="GeneID:136717243"
     CDS             775..1977
                     /gene="meis2a"
                     /codon_start=1
                     /product="homeobox protein Meis2a isoform X6"
                     /protein_id="XP_066550856.1"
                     /db_xref="GeneID:136717243"
                     /translation="

MAQRYDELPHYGMDGVGVPASMYGDPHAPRPLPQVHHLNHGPPLHASQHYGAHAPHPNVMPTGMGSAVNDVLKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPASWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM"

     misc_feature    1099..1353
                     /gene="meis2a"
                     /note="N-terminal of Homeobox Meis and PKNOX1; Region:
                     Meis_PKNOX_N; pfam16493"
                     /db_xref="CDD:465140"
     misc_feature    order(1615..1617,1744..1746,1753..1758,1765..1767)
                     /gene="meis2a"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1654..1770
                     /gene="meis2a"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      

cacatcacaggcgcgcggctcccctctccgtctcgagctgcggcaggactggctgcggccgccgccacttccgggttccgtcatttcattctcccgccgctcggcgctgcgaactgactcggctctataagcgagcaggcagccaacctgccaacactcactgacactcactcatcccggaccgagagacggagccgacgccgacagggggacgcggggaggaaaggacggatctgcagtctcctcattgccactgctttctctctgtgttgcagcccgagtgataataagagtgaaaaaaaagaaaagaaaaggagaaaaggcaaagaggagaagcggagttgtggggaagaagccgggctaaaacagacccatctctcctgatcctcatcaccagccatccctcattcattaccttgacaacccctggctttgattgacagctggagtggcggagagccacgagacgcgacagtgagccgcgcgcgctgcggatgggccgagagcaccctgcgctggggggctgacacgggggtttattttgttttttgtttttgttggggggggggtgagaaagaggaaggaaaaaaaatttttttgcaccaactcctcctgatgctccggctggtgctttcccatattggaaaataggagaatccacgaagttggtggtgggggaaaaaaaaagggggatctgaccactaaatcactttccaaccgggactgggatattaaatctccgagccatccaggagtttattggagcgcaggctgatggcgcaaaggtacgatgaactgccccactacgggatggacggggtgggggtcccggcgtccatgtacggggacccccatgccccccggccgctcccccaggtgcaccacctgaaccacgggccgccgctgcacgcgagccagcactacggcgcccacgcgccccatcccaacgtcatgcccaccggcatgggctccgcggtcaacgacgtgctcaagagggacaaggatgccatttatggtcacccgttatttcccctgctagcgctggtctttgagaagtgcgagctggcgacgtgcaccccccgagagccgggcgtcgcgggcggcgacgtctgctcctccgactccttcaacgaggacatcgccgtctttgccaaacaggttcgagccgaaaaacccttattttcttcaaatcctgaattggataatttgatgatacaagccatacaagtattacgatttcatcttttggaattagaaaaggtccatgagctctgtgataacttttgccatcggtacattagctgtctaaaaggaaaaatgcccattgatctagtgatcgacgaacgggatggcagctcaaagtcggaccacgaagagctctcaggatcttccacaaacctagccgaccataacccagcgtcttggagagatcacgatgacgccacctcgacgcactcagcaggcacgccaggaccctccagtgggggccacgcttcacaaagtggggacaacagcagtgaacaaggagatggtttagataacagcgtggcctcgcccggaacaggtgacgacgatgacccagacaaggacaaaaaacgacagaaaaaacgcggcatatttccaaaagtagcaacaaatatcatgagagcgtggctattccaacatcttacacacccgtacccttccgaagaacagaaaaaacagttagcgcaagacacaggcctcacgattttacaagtaaacaactggtttattaatgccagaagaagaatagtacagcccatgattgaccagtcaaatcgagcaggttttcttcttgatccttcagtgagccagggagcagcgtacagtccagagggccagccaatggggagcttcgtacttgacggccagcaacacatggggatccggccagccggacctatgagtggaatgggcatgaatatgggcatggatgggcaatggcactacatgtaacctccatcttgtaaagcaaacgcaaagaaagggggaagtctacaaggcatgccaggggattatgtacctcagggtggtcctatgggcatgagtatggcacagccaaattacactcctccccagatgaccccacacccttcccagttacgacacggacccccaatgc

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