LOCUS       XM_065872562            1810 bp    mRNA    linear   MAM 22-JUN-2024
DEFINITION  PREDICTED: Phocoena phocoena vimentin (VIM), transcript variant X3,
            mRNA.
ACCESSION   XM_065872562
VERSION     XM_065872562.1
DBLINK      BioProject: PRJNA1126681
KEYWORDS    RefSeq.
SOURCE      Phocoena phocoena (harbor porpoise)
  ORGANISM  Phocoena phocoena
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Phocoenidae; Phocoena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089220) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963924675.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Phocoena phocoena"
                     /mol_type="mRNA"
                     /db_xref="taxon:9742"
                     /chromosome="2"
     gene            1..1810
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 mRNAs, 12 Proteins"
                     /db_xref="GeneID:136119134"
     CDS             176..1480
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin isoform X3"
                     /protein_id="XP_065728634.1"
                     /db_xref="GeneID:136119134"
                     /translation="

MSSRSVSSSSYRRMFGGPGTASRPSSSRSYVTTATRTYSLGSALRPGTSRSLYASSPGGVYATRSTAMRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLSEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRGYQRNFPASR"

     polyA_site      1810
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

taaaatctgcgccctcggcggggtcccgtcctctgccactctcgctccgggctccccgcaccagagactcagcagcgctccctttgcccacacccaccgcgccctcgcgcgcctctcctcccggagctagcccgcgccaccgcagccgcccagcccaccgccgccctctgcagtcatgtccagcaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcaccgcgagccggccgagctccagccggagctacgtgaccacggccacccgcacctacagcctgggcagcgcgctgcgccccggcaccagccgcagcctctacgcctcgtccccgggcggcgtgtacgccacgcgctccacggccatgcgcctgcggagcagcgtgcccggcgtgcgcctgctgcaggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctgaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccagctcaccaacgacaaagcccgcgtcgaggtggagcgcgacaacctgtccgaggacatcatgcgtctccgggagaagttgcaggaggagatgcttcagagggaggaagccgagagcaccctgcagtctttcagacaggatgttgacaatgcttcattggcacgtctggacctggagcgtaaagtggaatccttgcaggaagagattgccttcttgaagaaactacatgatgaggaaatccaggagctgcaggcccagattcaagaacagcacgtccagatcgatatggacgtttccaagcccgacctcacggctgccctgcgtgacgtccgccagcagtacgagagcgtggccgccaagaacctccaggaggctgaggaatggtacaagtccaagttcgctgacctctccgaggctgctaaccgcaacaacgatgccctgcgccaggccaagcaggagtcgaacgagtaccgtcggcaggtgcagtccctcacctgcgaggtggatgccctcaaaggcaccaacgagtctctggaacgccagatgcgtgaaatggaagagaactttgccgtggaagctgctaactaccaagacactattggccgcctgcaggacgagattcagaacatgaaggaagagatggctcgtcacctgcgtgaataccaagatctgttgaatgttaagatggctctcgacatcgagattgccacctacaggaagctgctggaaggagaggagagcaggattgcgctgcctcttcccaacttttcttccctgaacctgaggggttatcaacgaaacttcccagcatcacgatgacctggaataaagactgcacgtactccatgcggcaaaatactaccagtgagaataaaaaagaaatccgtatcttaaagaaacagctttcaagtgcctttctgcagttttttcaggagtgcaagatagatttgaaataggaataagctctagtccttgagaaccaacactcgtaaaagatttagaaaaaagtttacaacataatctagtttaccgaagacgccttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgcttttttccatcacgtatctgaccaacttgtttctgcttcaataaatctttggaaaactc

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