LOCUS       XM_065830581            1789 bp    mRNA    linear   VRT 18-JUN-2024
DEFINITION  PREDICTED: Patagioenas fasciata vimentin (VIM), mRNA.
ACCESSION   XM_065830581
VERSION     XM_065830581.1
DBLINK      BioProject: PRJNA1123650
KEYWORDS    RefSeq.
SOURCE      Patagioenas fasciata (band-tailed pigeon)
  ORGANISM  Patagioenas fasciata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae;
            Columbiformes; Columbidae; Patagioenas.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089048) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036971685.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/14/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Patagioenas fasciata"
                     /mol_type="mRNA"
                     /isolate="bPatFas1"
                     /db_xref="taxon:372321"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Massapequa, NY"
                     /collection_date="2022-08-25"
     gene            1..1789
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 36 Proteins"
                     /db_xref="GeneID:136097810"
     CDS             85..1464
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_065686653.1"
                     /db_xref="GeneID:136097810"
                     /translation="

MSFSTKNSSYRRMFGGGSRPSTGTRYITSSSRYSLGSSLRPSTARYVSASPGGMYATKTTSVRLRSSMPPMRLHDSVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILVAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMHEMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     polyA_site      1789
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

cgaggccaccgcccttcttcgtccgccgcgcacttgagcagccccgctccgctcccggattacaaagcccgcaccgccgccgctatgagcttcagcaccaagaactcctcgtaccgccgcatgttcggcgggggcagccgccccagcaccggcacccgctacatcacctccagcagccgctactctctgggcagctccctgcggcccagcaccgcccggtacgtgtccgcctcgcccggcggcatgtacgccaccaagacgacgtcggttcggctgcggagcagcatgccgcccatgcggctccacgactccgtggacttctccctggccgatgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggtggagctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcggttcctggagcagcagaacaagatcctggtggccgagctggagcagctcaagggcaagggcacgtcccgcctgggcgacctctacgaggaggagatgcgggagctgcgccggcaagtggaccagctcaccaacgacaaggcacgcgtggaagtggagcgggacaacctcgccgacgacatcatgcggctgagggagaagctgcaagaggagatgctgcagcgggaggaggccgagaacaccctgcagtccttccgacaggatgttgacaatgcctctctggcacgtcttgatctggagcgcaaagttgagtctctgcaagaggagattgtcttcttgaagaagcttcatgatgaggaaatccgagaactgcaggcccagctccaggaacagcacatccaaattgatatggatgtttccaagcctgatcttactgctgccctgcgtgatgttcgccaacagtacgaaagcgttgctgctaagaaccttcaggaagctgaagagtggtacaagtccaaatttgcagatctctccgaagctgctaataggaacaacgacgccctgcgccaggccaaacaagaagccaatgaataccgcaggcagattcagtctctcacctgcgaagttgatgctcttaagggaagcaatgaatccctggagcgccagatgcatgaaatggaggagaattttgctgttgaagctgctaactaccaagacactatcggccgtctgcaggatgagatccagaacatgaaggaagaaatggctcgccatctccgcgagtaccaggacctgctgaatgtaaagatggctcttgatattgagattgccacctacagaaaactgctggagggtgaagagagcaggattaacatgcctattccaacctttgcttctttgaacctgagagaaaccaacattgagtctcagccaatggttgacactcactcaaagaggacacttctaattaagactgtcgaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggagtaaagctgaagtgaggatgcatacttattaatgcaggagaaattcttaccagcaagatttaaaaagtccatgtcttaaaggaagaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagattattatgctaggaaataggtcttagatcttgcaaactgactctccctgaaggattagagtttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaattcaataaaactgctttttccagcacagtatgagcaacctgtcgctacttcaataaatctttggaaaatgg

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