2024-11-19 20:37:23, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_065511786 2074 bp mRNA linear INV 28-MAY-2024 DEFINITION PREDICTED: Calliphora vicina visceral mesodermal armadillo-repeats (vimar), transcript variant X2, mRNA. ACCESSION XM_065511786 VERSION XM_065511786.1 DBLINK BioProject: PRJNA1112357 KEYWORDS RefSeq. SOURCE Calliphora vicina (urban bluebottle blowfly) ORGANISM Calliphora vicina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Calliphoridae; Calliphorinae; Calliphora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_088784) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_958450345.1-RS_2024_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/22/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2074 /organism="Calliphora vicina" /mol_type="mRNA" /db_xref="taxon:7373" /chromosome="5" gene 1..2074 /gene="vimar" /note="visceral mesodermal armadillo-repeats; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:135960483" CDS 596..1864 /gene="vimar" /codon_start=1 /product="dnaJ homolog subfamily B member 12 isoform X2" /protein_id="XP_065367858.1" /db_xref="GeneID:135960483" /translation="
MATAYKGMHAEENDTSSTNTNHNNSNRKLNNYDDDDEKEQQIIDIALIEMNNGNYDKAISLLDKAKQLYSSSRAEELQELIIKLQSNAFKSSEPKTTNNSKPTSVHQRKQSNPDARNSADEYKSQSDFTNDQLNLVKKINNCKNYYQVLSVTREASDSEIKKAYKKLALHLHPDKNHAPGAVEAFKTLGNAMTILTDGKKRKEYDLSGGDYITPTGKSSNFSKSTSSFQQYYSHSHQHHRNSPSEGAFSAGEEFTAEELFHMFFGNYPSSQGQYRRRPYQAANQRQPQEQGQQPSLAFVLLLLMILISMFMSLASTDPLYSLSHSSKYNVRRQTQHLSIPYYVKDNFDSDYHGSLPRLEHSVEEDYVYTMKQHCFRERTYREAMMTRARGFGSRAQFAQAQDLKMPSCDNLSKIGITRYSLY"
ORIGIN
agaaaagataacaaaacagaattggaaaaactgacattacgttttttgttctcgatcctgtaagaagttgagctcgcttttattcggatttgttttttcttcttttcaaagccttttgtgtagttgtgcataactatttgaatggaaatttatttactattgattactaaactttgctaataagtaattaaaaaaattcattaataattcgtttagtgtgcaaaaaaggggtgtgttgtgtttattattattttccatttcaagtgataaaagtgtacatacatacgtatataataaaatatttttttatattataccggaaaaataatgtaatgcctaaataaacatagagaaaagaaaacgaaatacagaattttcataaataaaaatagagctataacaaataaatacacatataatacatactaacagccaagcacgagtgcaacgaagcgtttctttagtgcagcagcagcaaatacatacaatttttccatcatcaaacaaaaagaggaataaagaccagacaggcaacataccaaattaagaagaaaaaaacccaaccagccagcaagtgaaccaaagaacctgaacaatggcgactgcttataaaggaatgcatgcggaagaaaatgatacatcatctacaaacacaaatcataataattccaaccgaaaactaaacaactacgatgatgatgatgaaaaagaacaacagattattgacatagcattgatagaaatgaacaatggaaactatgataaagctatctcgctattggacaaggctaaacagctgtattcaagttcgagggcagaggaattgcaagaattaataataaaattgcaaagtaatgctttcaaatcgagtgagcccaaaacaacaaacaactcgaagccaacatcggtacatcaacgtaaacaatctaatccggacgctaggaattccgcagatgaatacaaatcccaatcggactttactaatgatcaattaaatttagtaaagaaaataaacaattgcaaaaattattaccaagttttgtcggtaactcgtgaggcctccgatagtgagattaaaaaggcttataagaaattggccttgcacttacatcctgataaaaaccatgcacccggtgccgttgaggcattcaaaaccctgggcaatgctatgactattttaacagatggcaaaaaacgcaaagaatatgatttatctggtggtgattacataacaccaactggcaaatcatccaatttcagtaagagcacttcatcttttcaacagtattacagtcacagtcatcaacatcatcgcaatagcccatcggagggagcgtttagtgctggcgaagagtttacggcagaagaattattccacatgttctttggcaattatccctcatctcagggtcaatatcgtcgtcgcccatatcaggctgctaatcaacgtcaacctcaggagcagggccaacaaccaagtttggctttcgtcctattacttttaatgatactgatatcaatgtttatgtctctagcttcaacggatccattatatagtttatcacattcaagcaaatacaatgtgcgtcgtcaaacacaacatttatctattccttattatgttaaagataatttcgatagtgattatcacggttcattgccacgtttagaacattcagttgaagaggattatgtctacactatgaagcaacattgttttcgtgaacgcacttatcgtgaagcaatgatgacacgtgctcgcggttttggaagtcgtgcacaatttgctcaagctcaagatttaaaaatgccatcctgtgataacctatcgaaaattggcataactcgttattcgctgtattgaattaacgatgatgcattcaaaatgatcatatacatacatatgcacccacatacgctatttaaagggccgcaatatcctgtcacactaaatgtttttagtatattcttagtattttaataaatggtataaaaatattaatacatatatctaaaaacactaattacttgatacatgttacagtattatgtttcagaaatgaataaataaata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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