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2024-11-19 20:37:23, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_065511786            2074 bp    mRNA    linear   INV 28-MAY-2024
DEFINITION  PREDICTED: Calliphora vicina visceral mesodermal armadillo-repeats
            (vimar), transcript variant X2, mRNA.
ACCESSION   XM_065511786
VERSION     XM_065511786.1
DBLINK      BioProject: PRJNA1112357
KEYWORDS    RefSeq.
SOURCE      Calliphora vicina (urban bluebottle blowfly)
  ORGANISM  Calliphora vicina
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Oestroidea; Calliphoridae; Calliphorinae; Calliphora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_088784) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_958450345.1-RS_2024_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/22/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Calliphora vicina"
                     /mol_type="mRNA"
                     /db_xref="taxon:7373"
                     /chromosome="5"
     gene            1..2074
                     /gene="vimar"
                     /note="visceral mesodermal armadillo-repeats; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 Proteins"
                     /db_xref="GeneID:135960483"
     CDS             596..1864
                     /gene="vimar"
                     /codon_start=1
                     /product="dnaJ homolog subfamily B member 12 isoform X2"
                     /protein_id="XP_065367858.1"
                     /db_xref="GeneID:135960483"
                     /translation="
MATAYKGMHAEENDTSSTNTNHNNSNRKLNNYDDDDEKEQQIIDIALIEMNNGNYDKAISLLDKAKQLYSSSRAEELQELIIKLQSNAFKSSEPKTTNNSKPTSVHQRKQSNPDARNSADEYKSQSDFTNDQLNLVKKINNCKNYYQVLSVTREASDSEIKKAYKKLALHLHPDKNHAPGAVEAFKTLGNAMTILTDGKKRKEYDLSGGDYITPTGKSSNFSKSTSSFQQYYSHSHQHHRNSPSEGAFSAGEEFTAEELFHMFFGNYPSSQGQYRRRPYQAANQRQPQEQGQQPSLAFVLLLLMILISMFMSLASTDPLYSLSHSSKYNVRRQTQHLSIPYYVKDNFDSDYHGSLPRLEHSVEEDYVYTMKQHCFRERTYREAMMTRARGFGSRAQFAQAQDLKMPSCDNLSKIGITRYSLY"
ORIGIN      
agaaaagataacaaaacagaattggaaaaactgacattacgttttttgttctcgatcctgtaagaagttgagctcgcttttattcggatttgttttttcttcttttcaaagccttttgtgtagttgtgcataactatttgaatggaaatttatttactattgattactaaactttgctaataagtaattaaaaaaattcattaataattcgtttagtgtgcaaaaaaggggtgtgttgtgtttattattattttccatttcaagtgataaaagtgtacatacatacgtatataataaaatatttttttatattataccggaaaaataatgtaatgcctaaataaacatagagaaaagaaaacgaaatacagaattttcataaataaaaatagagctataacaaataaatacacatataatacatactaacagccaagcacgagtgcaacgaagcgtttctttagtgcagcagcagcaaatacatacaatttttccatcatcaaacaaaaagaggaataaagaccagacaggcaacataccaaattaagaagaaaaaaacccaaccagccagcaagtgaaccaaagaacctgaacaatggcgactgcttataaaggaatgcatgcggaagaaaatgatacatcatctacaaacacaaatcataataattccaaccgaaaactaaacaactacgatgatgatgatgaaaaagaacaacagattattgacatagcattgatagaaatgaacaatggaaactatgataaagctatctcgctattggacaaggctaaacagctgtattcaagttcgagggcagaggaattgcaagaattaataataaaattgcaaagtaatgctttcaaatcgagtgagcccaaaacaacaaacaactcgaagccaacatcggtacatcaacgtaaacaatctaatccggacgctaggaattccgcagatgaatacaaatcccaatcggactttactaatgatcaattaaatttagtaaagaaaataaacaattgcaaaaattattaccaagttttgtcggtaactcgtgaggcctccgatagtgagattaaaaaggcttataagaaattggccttgcacttacatcctgataaaaaccatgcacccggtgccgttgaggcattcaaaaccctgggcaatgctatgactattttaacagatggcaaaaaacgcaaagaatatgatttatctggtggtgattacataacaccaactggcaaatcatccaatttcagtaagagcacttcatcttttcaacagtattacagtcacagtcatcaacatcatcgcaatagcccatcggagggagcgtttagtgctggcgaagagtttacggcagaagaattattccacatgttctttggcaattatccctcatctcagggtcaatatcgtcgtcgcccatatcaggctgctaatcaacgtcaacctcaggagcagggccaacaaccaagtttggctttcgtcctattacttttaatgatactgatatcaatgtttatgtctctagcttcaacggatccattatatagtttatcacattcaagcaaatacaatgtgcgtcgtcaaacacaacatttatctattccttattatgttaaagataatttcgatagtgattatcacggttcattgccacgtttagaacattcagttgaagaggattatgtctacactatgaagcaacattgttttcgtgaacgcacttatcgtgaagcaatgatgacacgtgctcgcggttttggaagtcgtgcacaatttgctcaagctcaagatttaaaaatgccatcctgtgataacctatcgaaaattggcataactcgttattcgctgtattgaattaacgatgatgcattcaaaatgatcatatacatacatatgcacccacatacgctatttaaagggccgcaatatcctgtcacactaaatgtttttagtatattcttagtattttaataaatggtataaaaatattaatacatatatctaaaaacactaattacttgatacatgttacagtattatgtttcagaaatgaataaataaata
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]