GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-19 20:43:18, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_065496941            2110 bp    mRNA    linear   INV 25-MAY-2024
DEFINITION  PREDICTED: Cloeon dipterum visceral mesodermal armadillo-repeats
            (vimar), mRNA.
ACCESSION   XM_065496941
VERSION     XM_065496941.1
DBLINK      BioProject: PRJNA1112833
KEYWORDS    RefSeq.
SOURCE      Cloeon dipterum
  ORGANISM  Cloeon dipterum
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Palaeoptera; Ephemeroptera; Pisciforma; Baetidae;
            Cloeon.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_088786) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_949628265.1-RS_2024_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/22/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Cloeon dipterum"
                     /mol_type="mRNA"
                     /db_xref="taxon:197152"
                     /chromosome="1"
     gene            1..2110
                     /gene="vimar"
                     /note="visceral mesodermal armadillo-repeats; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 Proteins"
                     /db_xref="GeneID:135947941"
     CDS             111..1928
                     /gene="vimar"
                     /codon_start=1
                     /product="GTPase-GDP dissociation stimulator vimar"
                     /protein_id="XP_065353013.1"
                     /db_xref="GeneID:135947941"
                     /translation="
MTENKRPSLASLLGELENAKSDDAILAALDSIVFSAAEFTNDSKELLQNVADRFANILESNQGPSSMERTARATAELAKLEVGRGAFAANKKLMVALSKLLLHLEDQPNVQLQACRALGNICYENDDGRAHVLEMDKGLETVIQLLGQAIKENQPLKSVVAGFLLNLLAGQEETQRKALELGIVPILTEYLESGSEEGNGQSHILMILNLLADINNELLTDRLCQAMVNLLGQSSSGELSEMCLELMLSQSESENVKSHLAKAQLCEQLNGLAHKHKDLLQDDEARGLLKLACDLIVSVLTGDEAMELLYMGGEGQVFKEMTAWLSIDDEDLQITAVLAMGNFARTDKHCMQIVKKGIGKKLLDLVAKNNAMAAGIRLQHALLSALRNLAIPAENKAILLKDGLLDSILPMIEIPTLPVVFKLLGTLRMAIDGQESAACQLGVNSALLSKVVSWCTTEDHPGVQGEANRLLAWMVKNAKSSEVNKAVAEAGGVKCLANMLMAEHTVMKNEALLALILISTSGKNLPEPGLDTLLDSTTASNLSKVLKESKETSLTANGLTLLKLLAPLAKESLIKAGIPSILKSLSSDEDVMKEAQVVSKMFDSG"
     polyA_site      2110
                     /gene="vimar"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
cttcgcggcgctaattgcacattgcaggtgtttgggcggcgccaaggtgcattattccactaaagggcggcgttctgcttttgatcttgcttgatgcatagcttttgctaatgacagaaaataaaagaccttcgctagcatcgctcctgggggagctcgagaatgctaagtcggacgatgctattttagcagctttagattctattgtcttctcggccgcggaatttactaatgattccaaagaattgcttcaaaatgtggcggatcgatttgcaaatattcttgagagtaaccaagggccatcgtccatggaaaggactgcaagagccactgcagaattagcgaagcttgaagtgggaagaggtgcctttgccgcaaataagaaactgatggtggccttgtccaagttgctgttgcacttggaagatcaaccaaatgtacaacttcaggcctgtcgcgcccttggaaatatttgctacgaaaatgatgatggccgagcgcatgttcttgagatggataaaggattggagactgtaattcaactacttggacaagcaataaaggaaaaccagcctcttaagagtgtggttgctggttttcttctgaatttactagcaggacaggaggaaacccagaggaaagctttggagctgggaattgtgcctatcctaaccgaatatctcgagtccggaagcgaagagggcaatggccagagccacatcttaatgattctaaacctcctcgcagacatcaacaacgaacttctcaccgaccgcctttgccaagccatggtcaatttgcttgggcaatcatcatcaggagaattgagtgaaatgtgcctggagctgatgttaagtcagtctgaaagcgaaaacgtaaaaagtcacttggccaaagcccaactttgcgagcagctgaatggtctggcacacaagcacaaagatctcttgcaagatgacgaagctcgaggccttttgaaattggcttgcgacttgattgtatctgtgctgactggagatgaagcaatggagctactatacatgggaggtgaagggcaggttttcaaagaaatgactgcgtggctttctatcgatgacgaagatctgcagatcacagcagttttagcaatgggaaattttgcgagaacagacaagcactgcatgcagattgtgaagaaggggattggcaaaaagctacttgatctagtagccaagaacaatgcaatggctgcaggaatccgcttgcaacatgctcttttgagcgctcttcggaatctcgccatccctgcagaaaacaaagcaattttattgaaagatggtttgctggacagtattcttccaatgatagaaatcccaactttgcctgtcgtttttaaactgcttggtactttgagaatggcaattgatggccaagagagcgctgcttgtcagctaggggtaaattctgcccttctttcaaaagttgtgtcgtggtgcacaactgaagaccatcccggtgtgcaaggcgaagcaaaccgcttgctggcatggatggtgaaaaacgccaagagttccgaggtcaacaaagcagttgctgaagctggcggtgttaagtgtcttgctaacatgttgatggcggagcacactgtcatgaagaatgaagcgcttctggccttgattttgatttcaacttctgggaaaaatctgccggaacctggccttgacacattgcttgattccacaactgcttccaatttatccaaagtacttaaggaatctaaagaaacttccttgacggctaatggtctgacacttctgaaactgttagctccactcgccaaagaaagtctgatcaaagcgggcattccatcaatcctgaaatctctctcaagtgacgaagatgtgatgaaggaagctcaagttgtttctaaaatgtttgactctggctaatttgaatcaagttcctgttttggtgctgattttctgtgattattggttccaattgccctagtcttttctgaattacttacggtaataatttaataacatgtaatcaactgtataaaccatggttaattattaaattaaggtttattaaattacatttgaataaatatttacattcaatttta
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]