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2025-04-20 15:30:09, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_065349303            2454 bp    mRNA    linear   INV 16-MAY-2024
DEFINITION  PREDICTED: Planococcus citri visceral mesodermal armadillo-repeats
            (vimar), mRNA.
ACCESSION   XM_065349303
VERSION     XM_065349303.1
DBLINK      BioProject: PRJNA1108321
KEYWORDS    RefSeq.
SOURCE      Planococcus citri (citrus mealybug)
  ORGANISM  Planococcus citri
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha;
            Coccoidea; Pseudococcidae; Planococcus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_088678) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_950023065.1-RS_2024_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Planococcus citri"
                     /mol_type="mRNA"
                     /db_xref="taxon:170843"
                     /chromosome="2"
     gene            1..2454
                     /gene="vimar"
                     /note="visceral mesodermal armadillo-repeats; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins"
                     /db_xref="GeneID:135835162"
     CDS             135..1979
                     /gene="vimar"
                     /codon_start=1
                     /product="GTPase-GDP dissociation stimulator vimar"
                     /protein_id="XP_065205375.1"
                     /db_xref="GeneID:135835162"
                     /translation="
MAEKTSIEELLSNLKIAIQKKSDVTEILLKLSKQCESNDIHVSADLLAQLVALLEKPEVTEKTAELIASLAKTESNREALTDQKLISKLCQLLQETISKKNNASLSLIKQICRALGNLCYENDDCRKFVLENSGLKVISDVVRHAVSLGDTDVGADLRACSVGFLLNFVAGNEDVYPMVLESDLKSLLCDVLDCGVTKKENESAAVHCLIIFGVFADSDPEPILNQRMCNTLVKVLRESTSGELVELSVELMNSQAEHDAVSLNLAKAGLCELLIQLLEKHKNLADDVDTRNLFKMACDLIIIILNDDESMELLYDNGKGNVFVEMVSWLSSSVKELQVTGILAIGNFARADDHCIEMVKQGISKKLLDMLSKNNTDKGDMKLQHALLSALRNLVIPDQNKTTVTKDGLLDVLYPMLSVNTFPVVFKLLGTLRIVVDKQESIAHELGCKKDLIQKVVEWSLTKDHPGVQGESIRFLAWIVKNCRKPDVLDVFIQCNAVPQMVEMIVSDHEVMQNEGLLAVTILSTVKLDLVEKVLLDSKIGEKIVRLLKERKPKKEVFINVLTLIRQLSSSNNLKQHLRKEGVSSAISDFAKTNETVSECKTEIAQVTKLLESG"
     polyA_site      2454
                     /gene="vimar"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
cgcaaatggaaaaaggacatgaatttttaaaatcataatttccagtgaataatcctttttatagctaggttatctgggccaatcggaaatatcgcgtgagaatatttatttatggtatatttacattgagtaaaatggcagagaaaaccagtatcgaagaattattgagcaatctgaaaatagccattcaaaagaaatcggacgtgaccgagattcttctcaaattatccaaacaatgtgaatcaaacgatattcacgtttctgctgacttattggctcaattggttgccctcctcgagaaacccgaagtaaccgaaaagactgccgagttaattgcttcattagccaaaacagaaagtaaccgtgaagcgttaactgatcagaaattgatctctaaattatgccaacttcttcaagaaaccatctctaagaaaaataacgcaagtttatcgcttattaaacaaatatgccgagctctgggcaatttgtgttatgaaaatgacgattgtagaaaatttgtgctcgaaaatagcggcttgaaggtaatctccgatgttgttcgtcatgctgtatcattgggtgataccgacgttggggcagatttaagagcttgctctgttggatttttattaaactttgttgccggaaatgaagatgtttatccaatggttttagaatcggatctaaaaagtttgctatgcgatgtattggactgcggagtaacgaaaaaggagaatgaatctgcagcagtacattgtttaatcatttttggagtattcgccgattctgatcctgaaccaattttgaatcaacgtatgtgtaatacgttagtaaaagtattgagggaatccacctctggagaattagtagagctttctgtcgaattaatgaattctcaagccgaacatgacgcagtatcgttgaatctcgctaaagctggactttgcgaacttcttatccagcttttggaaaagcataaaaatttggccgacgatgtcgatacgagaaatctattcaaaatggcttgtgatctaattataatcatacttaacgatgatgaaagtatggaattattatatgataatggaaaaggtaacgtgttcgttgaaatggtatcatggctttctagcagtgtcaaagaacttcaagtaactggaattttggcgattggaaattttgctcgagccgacgatcactgcatagaaatggtgaaacaaggcattagtaaaaaattactcgatatgttatcgaaaaataataccgataaaggtgatatgaaattacaacatgctctcttaagtgctctcagaaatttggtgataccagatcaaaataagacaacggtaaccaaagacggtttattagatgtactttatccaatgctttcggtcaatactttcccagtcgtgtttaaattactgggaactttgcggatagttgtcgataagcaagaaagcatagctcacgaactcggttgcaaaaaagatcttattcaaaaagtagtcgaatggagcttaaccaaagatcatcctggggtacaaggtgaatcaattcgtttcttggcatggatagtaaaaaattgcagaaaacccgacgtattggatgtatttattcaatgtaacgctgtacctcaaatggtcgaaatgatagtcagcgatcacgaggtaatgcaaaacgaaggattgctcgcagtcacaattctaagcaccgtaaaactcgatctagttgagaaagtccttttggattcaaaaataggcgaaaaaatcgtccgtctacttaaagaacgtaaaccaaagaaagaagtcttcattaacgtattaacattaattcgtcaattatcctcttccaacaatttgaaacaacatttacgtaaagaaggtgtcagttcagcgatatcagattttgccaaaaccaacgaaaccgtatccgagtgcaagacagaaatcgcacaagtcaccaaattactagaatccggttaaagcgagatcgacgattaataattatttttcaattatcgtgcacaattttttgatttataaaaaaattttcagcaacgtgctacatgtcgctaatttcatatttttagcttgaagtgcttgttcaaaaagattgtgtgagtttgaattttttgtcgttttttctttacagttttaaagccgcgtttaggagacgtgattagggaagtttttttgtttttttgagtggatgcattcggcgaagaaaaaaagaaacgcgaaaacacgatttttttaaagtacaaatttggctcatcgctttttgttttatactacatagggttaagttatattgtttgacaacatgataggagaaattagtttctgattacgatttttttcgttcatctagtcattatttgttaccttttttttctttataattaacgttttcaatttttaatgcttaataaaactgttttcgtgcaatgttcattca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]