2024-11-19 20:29:47, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_061326275 3656 bp mRNA linear INV 07-DEC-2023 DEFINITION PREDICTED: Saccostrea echinata uncharacterized LOC133190573 (LOC133190573), mRNA. ACCESSION XM_061326275 VERSION XM_061326275.1 DBLINK BioProject: PRJNA1046542 KEYWORDS RefSeq. SOURCE Saccostrea echinata ORGANISM Saccostrea echinata Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Saccostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026889771) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_033153115.1-RS_2023_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3656 /organism="Saccostrea echinata" /mol_type="mRNA" /isolate="AGI-Se365-2" /db_xref="taxon:191078" /chromosome="Unknown" /tissue_type="muscle" /ecotype="Australia" /geo_loc_name="Australia" /collection_date="2022" gene 1..3656 /gene="LOC133190573" /note="uncharacterized LOC133190573; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:133190573" CDS 48..851 /gene="LOC133190573" /codon_start=1 /product="uncharacterized protein LOC133190573" /protein_id="XP_061182259.1" /db_xref="GeneID:133190573" /translation="
MQLRIKFISSSTHTVPYSTADLVYGVETSQSDIVEGRCNSFVDVAGRESRVSSCELKESDYRHSSGRGRPGKSVSIEKVNFCKETDDNFGPHQFFPSTKHIQCRPNAVRSSIIRGDPMYSMRTNSLASGRDTEDLIAMGTIWSPNAQTPAKQLNSSTSSASTVTNSAITNVTGRNMQMYTTQGSNSSTGIPQTCRGRYTISGMRPILVQTSRNSNVKDVDPRYADPVVGAPASFQQRLMELSALEGETIRYERSKKVKKKVKQDRDS"
polyA_site 3656 /gene="LOC133190573" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
acctttgggaacgaacacccattctattattgttgaaccccagcgaaatgcagctaaggattaaatttatttcttcctcgacccacacagtgccttattccactgctgatcttgtgtatggtgttgaaaccagtcaatctgacatagttgaagggagatgcaatagttttgttgatgtagctggaagagaatcaagagtctcatcttgtgaactaaaagaatcagattacagacattcaagtggcagaggaagacctggaaaatctgtatctattgaaaaagtaaatttctgcaaggaaactgatgataattttggacctcatcaattttttccttcaacaaaacatatccagtgtagaccaaatgcagttaggagcagtattattagaggagatcctatgtacagtatgaggacaaacagtcttgcttcaggaagagatactgaggatttaattgcaatgggaacaatatggagtccaaatgctcaaacacctgcaaaacaattaaacagcagcacaagtagtgctagtactgtcacaaacagtgctattacaaatgtcacaggcagaaatatgcaaatgtatacaacacaaggatcgaatagttcaacaggaatacctcagacttgtagagggcgctacaccatatcaggaatgagaccaatactggttcaaacatcaagaaactccaatgtaaaagatgttgatccaagatatgcagatccagtagttggtgctcctgcttcatttcaacaaagactaatggaacttagtgcacttgagggagaaactatacgatatgaaagaagtaaaaaagtgaagaagaaagtcaaacaggatcgtgactcttaattgcatatggtttcttgggatttctcatcattcattagttaagctgagccatagttccagggctctctgatggaagtttgtctgtcatcaaagtgtaagtttgctggtctgttaccttcttatgtacatgtattcatcttcctcagtgccactgcagtagtttcaaccaaaatttgtcatagaggttcaaaatggtcatgctactttttcagagaaatgttacacaaattacattactgtagttatatttgacaagcatccccatatatttatagttatacaaaaattacattttattaaaatgatgatattttgcttactttaaggaataggatcatcaagtcttgtcagttgatgcatctaaggacctcgtatcatgttgactcaaaagctggtcacggtgacctgcattttaaattttgaggccattctttttcaaaatgatttagaggcatattttgaacaatttaaggcctatgatcaaactttgtcagttgatgtatcttgggtctgcagagaacgtcaactaaaaagtaggtcaccttgacctactttttgaattttatggctaatgtttttcaaaacaattaaggtcattaattcgaatactgagaggtttagaatcattaaatcttgtaagatgatgcatcttggggccatgaaacatatttattaaaaagtaggtcaaagtgaccttctttttgaactttgcagtctttcaatttcatagcattttagaggcataatttggacattttaaggcctatgattataaaactttctaagttgatgcatcttgagtcctcgaaaaacgtcaattgaaaagtaagtcaccatgacctatttttgaaaatttatggctatatttaaatatttagggtactttttgacttagaatcatcaaaatttgtcagttgatgtatcttgggtccacagagtacatcaactgaaaagtaggtcatggtgacttaattttcaatttatatgactataatcaaatattttttcgggtaataattggcttagaatcatcaaactttgtcagttgatgcatcttgggtcctcggagtaagtcaactgaaaagtaggtcaccgtgacctacttttgaaaatttatggctttaattaaatatttttcaggtattaattggcttagaatcatcaaactttgtcagttgatgcatcttgggtccttggagtatgacaactgaaaggtaggtcaccttgacctacttttgaaattttatggctgtatttaatattttctggcactatttggcttagaatcatcaaaatttgtcagttgatgtatcttgggtcctgtgagtcggtcgactgaaaagtaggtcaccttgaccttcttttcaatttataaactataattaaatatttcgggtactgtttggcttagaatcatcaaactttgtcagttgatgcatcttgggtcttcggagtaggtcgactgaaaagtaggtcactttgacctaatttatgactttagttaaatatttcaggtactaattggcttagaatcatcaaactttgtcagttgatgcatcttgggtcctcggagtacaacacctgaaaagtaggtcactgtgacctacttttgaaaatttatggcttttattaaatatttcgggtactaattggcttagaatcaacaaactttgtcagttgatgcatcttgggtccacggagtaagttgactgaaatgtaggtcaccatgacctacttttgaaattttattactttatttaaatatttttaggtaataattggctaagaatcatcaaactttgtcagttgatgcatcttgggtccgcatagttagtcgactgaaaaggaggtcactgtgacctatttttgaaattttatggttataatttaaaaattattttaggtattaattggcttagaatcatcaaacttagttgatgcatcttgggtcctcagagaatgacaagtgataagtgggtcaccatgacctactctcaggtactaattagcttagaatcatcttggattcccagagtgtttcatctaaaatgtaggtcatgatgacctacctttggaatttcaaggctttatctaaatattcaagatacttggaagcttcagatagaagtgatagtttgtacagtttatcggaagagcgattcaaggcccttgggcctcttgttttagtttgttttttctttctcaaaaatggggctacatttgacaattatacaagtgtcaataggtaatgaagatttaactttattgaaataatgccatagagggatagagtggggccttaataggcgatcatagtttaataaaaatgccttttacaagaacagcaagggcatgagaagtcataactagaagcaagcatctgattcaccatgtatttttcaaatcatggccttggagggggtgggaggggttttcatattattgttggggacaatatatatctacccccactgcattaactgtcatctattgtgcattttgtaaccagctgaagaaaacataaaaatgtacatattgttatttatgtacaaatataaaaatgtacatattgttatcaatgacaaaactgtccctaaattcactgcacatattgttgcttcaaattatggttacttaaggaatttttttggttttatgaatgcaatatgtaaagcatgtagatctgtcatgtaggcaaattcgtgaagcgcaatattgattatggtaattgtccaagtttactttctttgcataaaatttttcattagcttgtatgttcaataaagacaaatttagttttaaaca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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