LOCUS       XM_057828317            3039 bp    mRNA    linear   VRT 16-MAY-2024
DEFINITION  PREDICTED: Corythoichthys intestinalis argonaute RISC catalytic
            component 3b (ago3b), transcript variant X3, mRNA.
ACCESSION   XM_057828317
VERSION     XM_057828317.1
DBLINK      BioProject: PRJNA989181
KEYWORDS    RefSeq.
SOURCE      Corythoichthys intestinalis (scribbled pipefish)
  ORGANISM  Corythoichthys intestinalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei;
            Syngnathidae; Corythoichthys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_080416) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_030265065.1-RS_2024_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3039
                     /organism="Corythoichthys intestinalis"
                     /mol_type="mRNA"
                     /isolate="RoL2023-P3"
                     /db_xref="taxon:161448"
                     /chromosome="22"
                     /sex="male"
                     /tissue_type="body"
                     /dev_stage="adult"
                     /geo_loc_name="Philippines"
     gene            1..3039
                     /gene="ago3b"
                     /note="argonaute RISC catalytic component 3b; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 Proteins"
                     /db_xref="GeneID:130910763"
     CDS             541..3039
                     /gene="ago3b"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X3"
                     /protein_id="XP_057684300.1"
                     /db_xref="GeneID:130910763"
                     /translation="

MESGTTGAASAQALFSLPQRPGYGTVGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVKHFKVTIFGDHLPVYDGKKSLYTANPLPVATGGVDLDVTLPGEGGKDRPFKVTVRFVSLVSWHLLHDVLLGRGTAQPLDLEKPVSTNPVHAVDVVLRHLPSMKYTPVGRSFFSSPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASLQTFPLQLENGQTIERTVAQYFREKYNLHLKYPHLPCLQVGQEQKHTYLPLEVCNVVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYSADPFVQEFQFHIRDEMAQVTGRVLPAPMLQYGGRVSSEPYMNRTVATPSHGVWDMRGKQFHTGVEIKIWAIACFATQRQCREENLRSFTDQLRRISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYMGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKPSPQTLSNLCLKINVKLGGINNILVPQQRPSVFQQPIIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPHEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADDFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDR"

     misc_feature    763..1041
                     /gene="ago3b"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    1069..1221
                     /gene="ago3b"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    1222..1584
                     /gene="ago3b"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1378..1380,1423..1425,1465..1467,1477..1479,
                     1531..1533,1552..1554,1558..1560)
                     /gene="ago3b"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1717..3015
                     /gene="ago3b"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2149..2151,2161..2163,2197..2208,2215..2217,
                     2239..2241,2248..2250,2260..2262,2272..2274)
                     /gene="ago3b"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2353..2355,2359..2361,2569..2571,2983..2985)
                     /gene="ago3b"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

tctttacgttgtttgctaacttgacttaagggcagaagaaggcgctgcatatacatttcactcaccgggctaaatgtcgctgctgtcgaggcaaatttcggggtagtgaaaccgtgatactatttgataaacacgcaaaataacaagaggacgaaattaaatattgggtaaatattcacaggaactccatctgtcgtgttgtcacgctgtctaaatgttaccgtagtttgttgagggttagcggctaacactctgtcagccatatcgaagcaagattgggagaattttaactctcggtttcagacggaagtaattctcaaagaaaaaaaatttgaaaaaaagttagcgggttgatttttacgactcttggtttactttgggataactaccgggtgagtgaacccacctctgccccagcggcccggttccacccaaaccggggcaaccgggaggcagcgtctggatcatccggggaaggcgttctctgagcggggaggattggtcactgggtgccgggtaatccgggaagagaactcatgaatggaaagcggaacaacaggagccgctagcgcccaagcccttttctcattgccgcagcgacccggctatggcactgtcggaaagcccatcaagcttctggcaaactgcttccaggttgagatacccaagattgacgtctacctgtacgaggttgacatcaaacctgacaaatgtcctcgcagggtcaacagagaagtggtggactccatggtcaaacatttcaaggtgaccatcttcggtgaccaccttccagtttacgatgggaagaaaagcctctacacagctaacccacttcctgtcgccactggcggggtggatttggacgtcaccctcccaggcgaaggtggcaaggaccgcccatttaaggtcaccgtgaggttcgtatcattggtcagctggcacctgctgcacgacgtcctgctggggcgcgggacggcccaaccattggacctggaaaaacccgtcagcaccaacccggttcatgccgttgacgtggttcttcgtcacttgccctccatgaagtacacacctgtcgggcggtccttcttctcctccccggaaggttacgaccacccgctcggtggaggacgagaggtctggttcggcttccatcagtctgtacgacctgctatgtggaagatgatgctcaacattgatgtgtcagccaccgcgttttataaagcccagccggtcattcagttcatgtgcgaggtgctggacattcacaacattgacgagcagccccgcccactcactgattcgcacagggttaaatttaccaaagaaattaaaggtctgaaagtagaggtgacacactgcggaaccatgcgaagaaagtaccgagtttgcaatgtaacacgacgccctgcaagccttcaaacttttcctttgcaactggagaacggtcagaccattgaacgcacagtagcgcaatacttccgggagaagtacaacttgcacctcaagtacccccacctgccttgtttacaagtgggacaagaacaaaaacacacctacttaccacttgaggtatgcaacgttgttgctggtcagcgctgcatcaaaaaactgaccgataaccaaacatccaccatgatcaaagcaacagcccgttctgctccggacagacaagaagaaatcagccggctggtgcggagcgccaattacagcgccgacccattcgtccaagagttccagttccacatccgcgacgagatggcgcaggtgaccggccgcgtcctgccggcccccatgctgcagtatggcggcagggtgagctccgaaccctatatgaaccgcacagtggccacgcccagtcacggggtgtgggacatgaggggtaagcagttccatacaggagtggagatcaagatttgggctattgcctgtttcgccacccagaggcagtgtcgggaagagaatctcaggagctttaccgatcagcttcggagaatttccaaagatgctggcatgccaatccagggtcagccatgtttctgtaaatacgcccaaggtgcagacagtgttgagcccatgttccgacacctgaagaacacgtacatgggccttcagctcatcatcgtaatccttcctggaaaaacacccgtctacgctgaggtgaagcgggttggcgacacccttcttggcatggcgactcagtgtgtccaggtaaagaacgtagtcaagccctcacctcaaacgctgtccaatctctgcctcaaaatcaacgtcaagctcggcggcatcaacaacatcctggttcctcagcaacgtccctccgttttccagcagccaatcatctttcttggagctgatgtcactcaccctccagcgggagatgggaagaagccatcaatcgcggcggttgtcggcagcatggacgctcaccccagcaggtactgcgcaaccgtgcgagtccagaggcccagacaggaagtcatccaagacttggcctctatggtgcgagaactcttgatccagttctacaaatccactcgctacaagccaaccagaatcattttttatagagatggtgtgtccgagggccagttcagacaggtgttgtattatgagctactagcaatcagagaagcgtgcatcagtctggagaaggaatatcaaccgggcattacgtatattgtcgtgcaaaaacgacatcacacgcgactgttctgcgctgatcgcaacgaacgggttggaagaagcggaaacattcccgccggaacgactgtagacactgacatcacgcaccctcatgagtttgacttttacctctgcagtcatgctggaatccagggcacgagccgtccgtcccactaccacgtgttgtgggacgacaactgtttcaccgccgacgatttccaactcctcacctaccagttgtgccacacgtacgtgcgctgtacccgctccgtctcaatcccggcgcctgcttactacgctcacctggtggccttccgtgcacgctatcacttggtggacaaagaacacgataggtaa

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