2024-11-19 20:23:18, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_057821202 1258 bp mRNA linear VRT 16-MAY-2024 DEFINITION PREDICTED: Corythoichthys intestinalis claudin-like protein ZF-A89 (LOC130906667), mRNA. ACCESSION XM_057821202 VERSION XM_057821202.1 DBLINK BioProject: PRJNA989181 KEYWORDS RefSeq. SOURCE Corythoichthys intestinalis (scribbled pipefish) ORGANISM Corythoichthys intestinalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Corythoichthys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080412) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_030265065.1-RS_2024_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1258 /organism="Corythoichthys intestinalis" /mol_type="mRNA" /isolate="RoL2023-P3" /db_xref="taxon:161448" /chromosome="18" /sex="male" /tissue_type="body" /dev_stage="adult" /geo_loc_name="Philippines" gene 1..1258 /gene="LOC130906667" /note="claudin-like protein ZF-A89; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 232 Proteins" /db_xref="GeneID:130906667" CDS 71..1189 /gene="LOC130906667" /codon_start=1 /product="claudin-like protein ZF-A89" /protein_id="XP_057677185.1" /db_xref="GeneID:130906667" /translation="
MVSAGFQILGAVLGLIGWIGAIIVCALPMWRVTAFIGSNIVTSQTVWEGIWMSCVVQSTGQMQCKVYDSMLALSSDLQAARALVVIAIVVGIFAILLAVAGGKCTNCVEDPASKAKVGVAAGATFIAAGVLLLIPVCWTAHSVVRDFYNPLVVSAQKRELGAMTSAGVQMLAVFLCVLGFLGAIVTCVLPMWKVSAFIGNNIVTAQVFWEGLWMNCVKQSTGQMQCKVYDSMLALPQDLQAARAMVVIAILLMLMGLLLASAGGKCTNCVEDETAKSRVAAVAGVLCLVGGILLLIPVSWSAHVVIRNFYNPVLGDAQRRELGAALFVGWGSAGLLLIGGALLLCRCASRKDGRYSVKYSAPRSAASGGAYV"
misc_feature 83..538 /gene="LOC130906667" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 569..1060 /gene="LOC130906667" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 1258 /gene="LOC130906667" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gtcaccaggctggtcacacacttcaagaacaaaagaagaagcagaagaagtagtagagcaatcgtccgccatggtgtccgcgggcttccaaatcctgggtgccgtcctgggcctgatcggctggatcggtgccatcatagtgtgcgcgctgcccatgtggcgagtgacggccttcatcggcagcaacatcgtgacgtcacagacggtgtgggaaggcatctggatgagctgcgtggtccagagcacgggccagatgcagtgcaaggtctatgactccatgttggcgctcagctctgacctgcaggctgcgcgcgccctggtggtcatcgccatcgtggtgggcatctttgccatcctactggcagtggctggaggcaagtgcactaactgcgtggaagaccccgcgtccaaggccaaggtgggcgtggcagccggcgccaccttcatcgctgccggtgtcctgctgctcatccccgtgtgctggacggcccatagcgtggtccgggatttctacaacccattggtggttagcgcccagaagagggagctgggcgccatgacgtccgctggtgtgcagatgctggctgtcttcctatgcgtcctgggcttccttggtgccatcgtgacatgtgtgctgcccatgtggaaagtctcagccttcattggcaacaacattgtgacagcgcaggtattctgggaaggcctttggatgaactgcgtgaagcaaagcactggccagatgcagtgtaaggtctacgattccatgttggcgctgccccaggatcttcaggcggcccgtgccatggtggtcatcgccatcctgttgatgctgatgggtcttctgctggccagtgcgggaggtaaatgcaccaactgcgtagaggacgagaccgccaagtcccgggtggcggcggtggctggtgttctgtgcttggtcggcgggatactgctgctcatcccagtgtcgtggtctgcccacgtggtcattcgtaacttctacaaccctgtgctgggcgatgcgcagagacgggagctgggcgccgcgctctttgtcggttggggatcggccggcctgctgctcatcggaggggccctgctgctgtgtcgctgtgcatctcgcaaggacggcagatactctgtcaaatactctgcgccacgctctgcagctagcgggggcgcttatgtttgaatgctcaagccacatagtcttaattgagtttactgatggaattttaataaatgtcacttttaaagttta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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