2024-11-19 20:39:00, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_029435602 2398 bp mRNA linear VRT 06-JUN-2019 DEFINITION PREDICTED: Cottoperca gobio GRIP domain-containing protein RUD3-like (LOC115010807), mRNA. ACCESSION XM_029435602 VERSION XM_029435602.1 DBLINK BioProject: PRJNA530544 KEYWORDS RefSeq. SOURCE Cottoperca gobio ORGANISM Cottoperca gobio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bovichtidae; Cottoperca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041355.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cottoperca gobio Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2398 /organism="Cottoperca gobio" /mol_type="mRNA" /db_xref="taxon:56716" /chromosome="1" gene 1..2398 /gene="LOC115010807" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:115010807" CDS 22..951 /gene="LOC115010807" /codon_start=1 /product="GRIP domain-containing protein RUD3-like" /protein_id="XP_029291462.1" /db_xref="GeneID:115010807" /translation="
MASGNTGPNCTVSSADVMDEMSIYVNVERPSGCHSQRKRKINISENIYENVSLLTLGPNRTGTAPSGAEEVKKNSCRAAAVCLGLLCLLLLAGLITLVCIFTKSNSERETNIILLHSSYNNLTKEKDELQTRHNNLTKEKDQLQTRYNNLTKEKDQLQTRYNNLTKEKDQLQTSYNNLTEEKDELQTRHNNLTEEKDELQTRHNNLTEEKDELQTRYNNLTKEKDELQTRHNNLTKEKDQLQTRYNNLTKEKDQLQTSYNNLTKEKDQLQTRYNNLTKEKDQLQTSYNNLTEEKDELQTSYNNLTKEKD"
misc_feature 364..>933 /gene="LOC115010807" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" ORIGIN
aagcagacactacagactttgatggcttcaggcaacacaggaccaaactgcaccgtcagttcagcggacgtcatggatgagatgtccatctatgttaatgtagagagaccatcaggttgtcacagccagaggaaaaggaagataaacatatcagaaaatatttatgaaaatgtgtctctcctcactctggggccaaacagaactggaactgcaccctcaggtgctgaagaagtgaagaagaactcctgcagagctgctgcagtgtgtctgggtctgttgtgtcttctccttctggctggactcataactctggtttgcatcttcaccaagagcaactctgagagggaaacgaacattatcctgttacacagcagttacaacaacctgactaaagagaaagacgagttacagaccagacacaacaacctgactaaagagaaagaccagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagacgagttacagaccagacacaacaacctgactgaagagaaagacgagttacagaccagacacaacaacctgactgaagagaaagacgagttacagaccagatacaacaacctgactaaagagaaagacgagttacagaccagacacaacaacctgactaaagagaaagaccagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagttacaacaacctgactaaagagaaagaccagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagacgagttacagaccagttacaacaacctgactaaagagaaagactagttacagaccagatacaacaacctgactaaagagaaagactagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagttacaacaacctgactaaagagaaagactagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagttacaacaacctgactaaagagaaagactagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagttacaacaaccagactaaagagaaagaccagttacagaccagatacaacaacctgactgaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagaccagttacagaccagatacaacaacctgactgaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagaccagttacagaccagatacaacaacctgactgaagagaaagaccagttacagaccagatacaacaacctgactgaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagaccagttacagaccagatacaacaacctgactgaagagaaagaccagttacagaccagatacaacaacctgactgaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagaccagttacagaccagatacaacaacctgactaaagagaaagacaagctgcaagagagatttgaagccctgaccaaagacataaatgatcttcagagagagagaggttgttatatcccaggaaaatgaaggctcgatttactgcacacaaaggaagaggatcgcgcttgagttgtacctatctttcacaatgaaggctgtagacatatacactgcatcattgcttaccagagagcattttgcaaagaggcgactcaacaaaaaagcttaactcaggatccctggcttcctgtccatccgcctgcctgctacctgctacccacttcaccctctgcctccacaagcaggatgttctctgtcctccgaaccctttccctggaaaccccttaaatatacctcctatctattgtattattaagtaatacttccctgcttttggtgtgtgatttatctatgccccctgaccgatcctttgttggatccaatacacaattaaaatcccctgctatagggcgtcccggtagctcaaccggtggcacaggcgtccgatatacaaaggcttagtccttgcccacagcggccactggttcgagtcagacctgtggtgtttgct
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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