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2024-11-19 20:39:00, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_029435602            2398 bp    mRNA    linear   VRT 06-JUN-2019
DEFINITION  PREDICTED: Cottoperca gobio GRIP domain-containing protein
            RUD3-like (LOC115010807), mRNA.
ACCESSION   XM_029435602
VERSION     XM_029435602.1
DBLINK      BioProject: PRJNA530544
KEYWORDS    RefSeq.
SOURCE      Cottoperca gobio
  ORGANISM  Cottoperca gobio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Perciformes; Notothenioidei;
            Bovichtidae; Cottoperca.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_041355.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Cottoperca gobio Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Cottoperca gobio"
                     /mol_type="mRNA"
                     /db_xref="taxon:56716"
                     /chromosome="1"
     gene            1..2398
                     /gene="LOC115010807"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:115010807"
     CDS             22..951
                     /gene="LOC115010807"
                     /codon_start=1
                     /product="GRIP domain-containing protein RUD3-like"
                     /protein_id="XP_029291462.1"
                     /db_xref="GeneID:115010807"
                     /translation="
MASGNTGPNCTVSSADVMDEMSIYVNVERPSGCHSQRKRKINISENIYENVSLLTLGPNRTGTAPSGAEEVKKNSCRAAAVCLGLLCLLLLAGLITLVCIFTKSNSERETNIILLHSSYNNLTKEKDELQTRHNNLTKEKDQLQTRYNNLTKEKDQLQTRYNNLTKEKDQLQTSYNNLTEEKDELQTRHNNLTEEKDELQTRHNNLTEEKDELQTRYNNLTKEKDELQTRHNNLTKEKDQLQTRYNNLTKEKDQLQTSYNNLTKEKDQLQTRYNNLTKEKDQLQTSYNNLTEEKDELQTSYNNLTKEKD"
     misc_feature    364..>933
                     /gene="LOC115010807"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
aagcagacactacagactttgatggcttcaggcaacacaggaccaaactgcaccgtcagttcagcggacgtcatggatgagatgtccatctatgttaatgtagagagaccatcaggttgtcacagccagaggaaaaggaagataaacatatcagaaaatatttatgaaaatgtgtctctcctcactctggggccaaacagaactggaactgcaccctcaggtgctgaagaagtgaagaagaactcctgcagagctgctgcagtgtgtctgggtctgttgtgtcttctccttctggctggactcataactctggtttgcatcttcaccaagagcaactctgagagggaaacgaacattatcctgttacacagcagttacaacaacctgactaaagagaaagacgagttacagaccagacacaacaacctgactaaagagaaagaccagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagacgagttacagaccagacacaacaacctgactgaagagaaagacgagttacagaccagacacaacaacctgactgaagagaaagacgagttacagaccagatacaacaacctgactaaagagaaagacgagttacagaccagacacaacaacctgactaaagagaaagaccagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagttacaacaacctgactaaagagaaagaccagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagacgagttacagaccagttacaacaacctgactaaagagaaagactagttacagaccagatacaacaacctgactaaagagaaagactagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagttacaacaacctgactaaagagaaagactagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagttacaacaacctgactaaagagaaagactagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagatacaacaacctgactaaagagaaagaccagttacagaccagttacaacaaccagactaaagagaaagaccagttacagaccagatacaacaacctgactgaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagaccagttacagaccagatacaacaacctgactgaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagaccagttacagaccagatacaacaacctgactgaagagaaagaccagttacagaccagatacaacaacctgactgaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagaccagttacagaccagatacaacaacctgactgaagagaaagaccagttacagaccagatacaacaacctgactgaagagaaagaccagttacagaccagttacaacaacctgactgaagagaaagaccagttacagaccagatacaacaacctgactaaagagaaagacaagctgcaagagagatttgaagccctgaccaaagacataaatgatcttcagagagagagaggttgttatatcccaggaaaatgaaggctcgatttactgcacacaaaggaagaggatcgcgcttgagttgtacctatctttcacaatgaaggctgtagacatatacactgcatcattgcttaccagagagcattttgcaaagaggcgactcaacaaaaaagcttaactcaggatccctggcttcctgtccatccgcctgcctgctacctgctacccacttcaccctctgcctccacaagcaggatgttctctgtcctccgaaccctttccctggaaaccccttaaatatacctcctatctattgtattattaagtaatacttccctgcttttggtgtgtgatttatctatgccccctgaccgatcctttgttggatccaatacacaattaaaatcccctgctatagggcgtcccggtagctcaaccggtggcacaggcgtccgatatacaaaggcttagtccttgcccacagcggccactggttcgagtcagacctgtggtgtttgct
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]