2024-11-19 20:29:03, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_028081207 2376 bp mRNA linear PLN 11-FEB-2019 DEFINITION PREDICTED: Vigna unguiculata protein NETWORKED 4B-like (LOC114191805), transcript variant X1, mRNA. ACCESSION XM_028081207 VERSION XM_028081207.1 DBLINK BioProject: PRJNA521068 KEYWORDS RefSeq. SOURCE Vigna unguiculata (cowpea) ORGANISM Vigna unguiculata Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_040285.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Vigna unguiculata Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2376 /organism="Vigna unguiculata" /mol_type="mRNA" /cultivar="IT97K-499-35" /db_xref="taxon:3917" /chromosome="7" /tissue_type="first leaves, hypocotyl, epicotyl and cotyledon" /dev_stage="seedling" /geo_loc_name="USA: Riverside, CA" gene 1..2376 /gene="LOC114191805" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns" /db_xref="GeneID:114191805" CDS 193..2202 /gene="LOC114191805" /codon_start=1 /product="protein NETWORKED 4B-like" /protein_id="XP_027937008.1" /db_xref="GeneID:114191805" /translation="
MMKNQPSQWWWLESHSNTKLSPWLQSTLTELNEKTKAMLKLIEEDADSFAQRAEMYYKKRPQLVSLVEDFYRTHRSLAERYDQVAGIRQQKTGGSPFSPLKHHQPEKLMSFANDSYDSYSESCDVEESGESEIDDPEQEEEEDSKIDNCVELDGVQFVAANDVMEIERLGEENKDHKDLNKQKYNIYEAVMLWEEIEQLRKESRVQKDELNRKSIVFGELMILKEEIEQLSRENRAQKDELNQKAIICGEAMMLREEIEQLSKENRVLKDELSQKSIICDEVMMLREEIEQIRKENRAQKEELNQKDVICGEAIMSREEIEKLSKENRVLKDELNQKSILCGEVMMLREEIAQLRKENRAQKDELNQKDNSCSEIMMLREEIEQLGKENGGLKDELKKKDNICGEIMMLREEIEQLGKENGALRDELKKDNICDEIMMLREEIEQMGKENGALKNELNKKDNICGEIMMLREEIEQLGKENGALKVELNKKYIICGEIMMLREEIEQLRKENRGQKNELDQKGIKCEVTMFRGEIEEYTKENRVKNDELSPEDSVCGEEVMLRKEIERLGKDERAQSGTLCGEVKKLRQENSAQKDRLKQKDQEKIEVIRNLSLAIDMLKQENVKMRSFIAKESANKWKNPFGFKNFMGSLSEQLFNGITKNQPSLVAL"
misc_feature 217..438 /gene="LOC114191805" /note="KIP1-like protein; Region: KIP1; pfam07765" /db_xref="CDD:429647" misc_feature <775..1725 /gene="LOC114191805" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" ORIGIN
ctctaattctatcgcaggcggtggtggcaagcattgcattaattcatgagtgttttctgctaaaggaagtggcattgttcggggaagtttatgtttgtttgtatgcggtgccttgtgaaagacgaagtggtagtgttagtgtatctcggctcttggtgttcttgataacataaacaactgaagagggctaaaatgatgaagaatcaaccgtcacagtggtggtggcttgagagccacagtaacactaaactatccccttggcttcaatccactctcacggagctaaatgagaagacaaaggcaatgttaaaactaattgaagaagatgcagattcctttgcccaacgtgctgagatgtattacaagaagagaccacagcttgtgagcctggttgaagatttctataggacacatcgatcattagctgagcggtatgatcaagtcgctggaattcgtcagcagaagactggaggatcccccttttctccgctcaagcatcatcaaccagagaagttgatgagttttgcgaatgacagttatgatagctattctgagagttgtgatgtggaggagtctggggaatctgaaattgatgatcctgagcaagaagaggaagaggattccaaaatcgataactgtgtagaactggacggagttcagtttgtggctgcaaatgatgtgatggaaattgagagacttggtgaagagaacaaggatcataaggatctgaacaagcagaaatataacatttacgaagcagtgatgttatgggaagaaatagagcaactcagaaaagagagcagggttcaaaaggatgaactcaaccggaaaagcatcgtttttggtgaattaatgattctgaaggaagaaatagagcaactaagcagagaaaacagagcgcagaaggatgaactcaaccagaaagctatcatttgtggtgaagctatgatgttgagggaagaaatagaacaactcagtaaagagaatagagttctgaaggatgaactaagccagaaaagtatcatttgtgatgaagtaatgatgttgagggaagaaatagagcaaatcagaaaagagaatagagcgcagaaggaagaactcaaccagaaagatgtcatttgtggtgaagcaatcatgtcgagggaagaaatagaaaaactcagtaaagagaatagagtcctgaaggatgaactgaaccagaaaagtatcctttgtggtgaagtaatgatgttgagggaagaaatagcgcaactcagaaaagagaatagagcgcagaaggatgaactcaaccagaaagataacagttgcagtgaaataatgatgttgagggaagaaatagaacaattgggaaaagagaatggagggctgaaggatgaactaaagaagaaagataacatttgcggtgaaataatgatgttgagggaagaaatagaacaattggggaaagagaatggagcgctgagggatgaactcaagaaagataacatttgcgatgaaattatgatgttgagggaagaaatagaacaaatgggaaaagagaacggagcgctgaagaatgaactcaacaagaaagataacatttgcggtgaaataatgatgttgagggaagaaatagaacaattgggaaaagagaatggagcgctgaaggttgaactcaacaagaaatatatcatttgtggagaaataatgatgttgagggaagaaatagaacaactcaggaaagagaatagagggcagaagaatgaactcgaccagaaaggtatcaagtgtgaagtaacgatgtttaggggagaaattgaagaatacacaaaagagaatagagtgaagaatgatgaactcagtccagaagacagcgtttgtggtgaagaagtgatgttaagaaaagaaatcgaacgacttggaaaagatgaaagagcacaaagtggtaccctttgtggtgaagtaaagaagttaaggcaagagaatagcgcgcagaaggaccgtcttaagcaaaaagaccaagagaaaatagaggtgataagaaacctgagtttagctatagatatgctgaagcaggagaacgtaaagatgagaagcttcattgctaaggaatctgccaacaaatggaagaatccatttgggtttaagaatttcatgggatcattatcagagcagttgtttaatggaattacgaagaatcaacctagtcttgtagctctctagataaggttcacagagtaaatagctaagttttgtagaacataatattaaaagaggcttgtgtacatgttatggggacctgctcaagtaacctgcagatcttgtatacagtttagtatattcctaactaatccaagaccgagtatctagaggatttcctctacacttgtttttata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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