LOCUS       XM_020655158            7033 bp    mRNA    linear   VRT 24-JUN-2024
DEFINITION  PREDICTED: Labrus bergylta argonaute RISC component 4 (ago4),
            transcript variant X1, mRNA.
ACCESSION   XM_020655158
VERSION     XM_020655158.3
DBLINK      BioProject: PRJNA1126594
KEYWORDS    RefSeq.
SOURCE      Labrus bergylta (ballan wrasse)
  ORGANISM  Labrus bergylta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089213) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 24, 2024 this sequence version replaced XM_020655158.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963930695.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7033
                     /organism="Labrus bergylta"
                     /mol_type="mRNA"
                     /db_xref="taxon:56723"
                     /chromosome="19"
     gene            1..7033
                     /gene="ago4"
                     /note="argonaute RISC component 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     Proteins"
                     /db_xref="GeneID:109999969"
     CDS             175..2832
                     /gene="ago4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X1"
                     /protein_id="XP_020510814.1"
                     /db_xref="GeneID:109999969"
                     /translation="

MEALGPGPPAPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDIDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVSLQWVSVVSLQMLLEALSGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNDMTEVTGRVLPAPMLQYGGRVSTDTGRDCGRGLSPQNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMSYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQDLSQVTPTPQEQLFSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKAERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHYDTQHTMYFA"

     misc_feature    256..645
                     /gene="ago4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    676..828
                     /gene="ago4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    829..1191
                     /gene="ago4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(985..987,1030..1032,1072..1074,1084..1086,
                     1138..1140,1159..1161,1165..1167)
                     /gene="ago4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1330..2703
                     /gene="ago4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1789..1791,1801..1803,1837..1848,1855..1857,
                     1879..1881,1888..1890,1900..1902,1912..1914)
                     /gene="ago4"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1993..1995,1999..2001,2257..2259,2671..2673)
                     /gene="ago4"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      7033
                     /gene="ago4"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gcaagcagcagtggaggctcaggtcagtcagtacagtcagcagtcatccacgcacctatctatattccccttttcttaaattagccacttttcagcttcgcgataccgcccccaatttcagcctcggtacggagccgccaggccgggacagagacggagagagaggcctcggccatggaagcgctcggacccggcccgcccgcaccaacctctctgtttcagcctccacggcgtcccggccttggcacggtggggaaacccatccggctccttgccaaccacttccaggtgcagattcccaagattgatgtctatcactatgatatcgacatcaagcctgagaaacggcctcggagggtcaacagggaggtggtggacaccatggtgcggcacttcaagatgcagatctttggagaccggcagcctggctacgacgggaagaggaacatgtacacagcacatccactgccaatcgggagggacagggtggacctggaggtgactctgcccggcgaggggaaagatcagacgtttaaggtgtccttgcagtgggtgtctgtggtcagtcttcagatgctgctggaggctctgtcaggccacctgaacgaggtccccgaggactcggttcaggctctggatgtcataacgcggcacctgccctccatgaggtatactcctgtggggcgttcatttttctcccccccagaaggctactaccatcctctgggcggaggcagggaggtgtggtttggtttccatcagtctgtccgtcctgccatgtggaacatgatgctcaacatcgatgtgtcagccacagccttctaccgtgctcagcctgtgatcgagttcatgtgcgaggtgctggatatacagaacatcaacgaacagaccaaaccactgaccgactcgcagcgtgtcaaattcacaaaggaaataagaggcttgaaagttgaggtcacacactgtggtcaaatgaagaggaagtaccgtgtgtgcaacgtaacgcgccgacctgccagccaccaaacgttccccttacagctagagaacggccaagccatggagtgcacagttgctcagtatttcaagcagaagtacaatctgcagctcaagtatccacatttaccgtgcctgcaagtagggcaggaacagaagcacacctaccttcccctggaggtctgtaacatagtcgcaggccagcgctgtatcaagaagctgacggacaaccagacatccaccatgatcaaagctacagctcgctccgcccccgacagacaggaagaaatcagcagactggtgaaaagtaacagcatggtcgggggtccggacccttacctgaaagagtttggcatcgtcgtgcacaatgacatgaccgaggtgacgggtcgtgtgctcccagcgcccatgcttcagtacgggggccgcgtgagcacagacacagggcgggactgtggcaggggactctctccgcagaataagaccgtggccacgcccaaccagggcgtgtgggacatgagagggaagcagttctacgccggcatcgagatcaaggtctgggccgtggcctgcttcgctccgcagaaacagtgcagggaggacctgctcaagagcttcaccgaccagctgcgaaagatctccaaggatgctgggatgcccattcagggccagccatgtttctgtaaatacgcccaaggagctgacagcgtggagcccatgttcaaacacctgaagatgtcttacgtgggcctgcagctgatcgtggtcatcctgcctggaaaaacacccgtctatgctgaagtgaagcgcgtgggcgacactctgctcggcatggcgacccagtgtgtgcaggtgaagaacgtagtgaagacatccccgcagaccctctccaacctgtgcctcaagatcaacgccaagctgggaggaatcaacaacgtcctggtgcctcatcagaggccctctgtgttccagcagccggtcatcttcctgggtgcagatgtcacccatcctccagcgggtgatgggaaaaagccgtccatcgcagcggtagtcggcagcatggacggccacccgagccgctactgcgccacggttcgagtccagacgtccagacaagatttgtcccaggtaacaccaaccccccaggagcagctcttcagccaggaggtgatccaagatttgaccaacatggtgcgggagcttctcatccagttctacaagtcgacgcgcttcaagcccacgcggatcatctactatcgtgggggagtgtcagagggacaaatgaagcaggtagcgtggccggagctgatagccatcaggaaggcctgtatcagcctggaggaggattacaggccgggcattacttacatcgtggttcagaaacgtcaccacacccgtctcttctgctccgacaaagccgagcgggttgggaagagcggtaatgttccagctggcaccacggtggacagcaccatcacacacccgtccgagtttgatttctacctgtgcagccatgctgggattcagggaaccagtcgtccctcccactaccacgtcctgtgggatgacaactgtttcactgccgatgaactgcagctcctcacctaccagctgtgccacacctacgtccgctgcacgcgctccgtctccatcccagcaccggcctactacgcccggctggtggctttcagagcccgctatcacctggtcgacaaagaccacgacagcgctgaaggcagccacgtgtcgggccaaagcaacggccgggaccctcaggcgctggcaaaggcagttcagatccactatgatactcagcacaccatgtacttcgcctgagctagcgagcacgtcagccagtccacccgcggattcccttttctctctgtctgtttatctcttatttgccattctctctctctctctgtctctctctctcttcatcttcttctcccacctctctctctctttttgtagcctgttccttttctcttcatcactcattctacattttctgaatctgcaccaaagcggctctttggacggggggaaatctgctgcgtcttctacgtccggcaggttttttttttttgttttgttttgtttgttttccaggaacaatctccaaccagcgttcccaaaacagagccgcctctcaaaccagcaatccagcactgcgagccctgagaggtttccaatgcacaaaaaagaagaaacaaaaacaaaaccatacacacacacacacatactacaagttgagccattattttgagtttttttttttttttttttctatttgaatgtctgcactcttgtgtttgtaatatacactgagcaagggagtggattggcacaacttgtgtcagcgcagctctttagctctcccagctaagcaggactcttctctacttttacctcaacgcccttttgggcaaaatctgtcacaaggtcttgggtttattgggtggcggggagggaactctacaggaaagagatggagggggagtcgaccttttgagaatgatatatatatacatatatatatatattttcctttttatgagcgtgtgttttaaccttttctccttttaccgtcttttacaagcgaggtgacctgggtgtcatgcccattactactttcctcccatcttagcgaagaacacccaagtctttatgtgagtgtgtgaatgtgtgtgtgtctctgtatatacatgttctgctgtatgagagtgtgttcgtgtgcgcacgtgtgtttcatggcaggccactgaattgtaaagggaaatcaaggagataactgctgtaaatgcctcagatttgttgtttttatattcacacatacagtacatataagcatatatttacatctatagagcaactttgagacatatgacttaaaaacaggcctcccagaggctggtgtgggtatttgtagcagtcctgaatcacttattaattgaagtgctttgaattacacgtgtgttagcgtgatgctaatgctacaatgaagggatttgcactccttttgtgcctgaaacatggaaaaacaaaaaaatctcatcaaatcaaagtaattgaatccatttcaagtattaagtgagttcaggtctgatgtgtagcagtagtaaccgcggtcgggccggtgactggctcagcattgggacctgttctgaaggcatagcaacacggagtacggtcttatcagccattctttctgtgtgtgaaaaagcaggatctttaattttctttggacctgattatctgaaagattttatgatgaaactgctggacgttgctttaatttgttgatttttttttttctttttaaaaagtagtttcaagggccggaaaccaatgtagtttttttttgtgtttttttttttttttttttggaggtctcctttgctaactggccaattcattgcactgacccgggacgctaggcaagcaacagagggcactctcaatctctcttacctttatgcatttatacatacgaatcaacaaagcagatttgtaaaagtttaatataagatgttttgtggttatcttaaaaaaaaaaaaaagagctgttgtttaggattagtagtttaccattgatgttgttgttctcgttgttgtcaatgttgttactattgtgatgaaattttacggttggccagcgaagccagttctatagttactagtgcgattcaggaatagacttcagttgtcgagctgcaggttaaagggggtagagctttgggtttggagcatttcattttgtagcatttgggttcatggtgagaaggaggaggagaagttaggccccaggacggaggaattcatgctttctcgttgggaatgtgagttaaatctagcagcaggttgaaggtcatagtgtagcactcgagatctgccgctgcgatcatcgctcagctggcgtcggctggaggaagatccgatagatggagacaatcagggatcgaaatcagactgaacctagatttaatggatttgtttaaagcggttttgcgattggcaatgagttgaatttttagactttttaacaaaaaaaaaacggtttctattactctgtgtgtatttgaggtatacccatcttaaagtctctgaaagctatttgaccgtgtttgtttcacatttatatgcatttttaacactggattaaaggaattgaaaaataagcataagcactgcccttggaccccctgtgcaaacactcagcagcctgttacggcgacagctggcaggcgtagcgccccctggtgttgcgatcggtaaaaacgcaggatgggtcgggtcgagacgggacgggagggtttggaggagaggtcgacgtgcacgcctcatcagggggggacagctcagtgaaaacgcttttgtaataaaccacccgtaaagcagcaggtttactatgaatgagtttgagcacccgcctgttggaggcgtgggcgttggcgatggcgttggcaggaaacatggagggctggttgggggagggggggtggggcggattgaagggggtgttgtccaggcattgcatgcaataagattgtgttttttaaaaaaaaaaaagggcggatcggattttaaaaacatgcactagtttgaacaagccaagtcagctgtaattgaacattcatctggcatctctaaacggggactgatttgattttttaaatcttttactatattggatccttaaactccagtctgataaacgatcactccctgtttgtaacatggcaaagcaatattgacccagttgtaattttcaaatgtggaaaaacaaagctataattctactcattgtggttgttggtctactcttactatcgtgtctctgtactttttttatttttgtaactttttagttccttttatttgcttgtatcaatcagtgggaatgtgcatttggtggaatagttatgtaggctgtagacaatttttctttcaagtaacaaaatgtagactttgctcgcctgcatgccagagtattgtcctttttggaaaaaaaacaagaaaaaaaaaaactttttgaatcatatttattatgagagaaaaaatataaacgcttttttttttttttttttttttttttttttttagggggtaaatgtttatgaatttagtgggactgttttaggctagcaatatctgttcagtctctccaagactcattttaaagattcctacacaaaagtcagtaattttgggaggtacactgatttggttttgttctgcgaggggagggagtcggatctttgcgtcgtgttcagattcaaacgaggtactttcttcaaacacggaccctcgttaaagacccgacccccttccctccttccccaggttactgaagggagcatccacttaagtctcctcgctcctggtttgtaactgtggccacacacctcctggcagggggctctcctgtctccatggcaactctgctgacccctcacaaatgcacttcctctttgtgccggggtcctcagcataaagcggagcaggattacctctttttaaccttttttaaaagaaaaaaaaaagatccatatttctttctgtgccccaatagaaagagagcatgaattatttttcaattcctctcactttgatatattgttatatcttaaccgatttgtaatttgacatgtgtattgtgtattttattttcctttttttcagttcttgttttcagggggaggggggtgggggggttgttatagctctgctctgtttctttttgtttctgctagtggtctctgaagctgtgtgtgtgatcgtctgatagcaatagaatcagagttggaaccttttcccactctgtgaaaatgaacggaaccctttctaaccagtcgtgagagggcagggttatgttctagctccgccccccagcagagggccattcaattgctgttattgctattatgtgacaaattcaaatacttattttttttttttttttttttttagcctgcagggaattcttgtgttaatgtgcaaagtaataaaaatggtattttatgcccattataaa

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