2024-11-19 22:26:55, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_020586334 3433 bp mRNA linear VRT 27-MAR-2017 DEFINITION PREDICTED: Monopterus albus testis and ovary specific PAZ domain containing 1 (topaz1), mRNA. ACCESSION XM_020586334 VERSION XM_020586334.1 DBLINK BioProject: PRJNA380265 KEYWORDS RefSeq; includes ab initio. SOURCE Monopterus albus (swamp eel) ORGANISM Monopterus albus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018128282.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Monopterus albus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 8% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3433 /organism="Monopterus albus" /mol_type="mRNA" /db_xref="taxon:43700" /chromosome="Unknown" /sex="male" /geo_loc_name="China" gene 1..3433 /gene="topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:109951701" CDS 1..2526 /gene="topaz1" /codon_start=1 /product="testis- and ovary-specific PAZ domain-containing protein 1" /protein_id="XP_020441990.1" /db_xref="GeneID:109951701" /translation="
MSQIGNDSRQNCEEYLLDHQQCGGHCNEEVKGISSKCKTLSSPTSVGDVNDDNEEESHDCGDDGEQAREEESSPSETAGSERDEAKAEAACDSEPDILDEFTAYEHDVLLIDVTQDDPELFENLPKKSLLKLGPMRVSEAPKTRPAGVKQMLLPRIDGASLKFERRLTPTYSPDITEESNSRPWRPQSRSITFKTQDNTWPAADKQTRNMAQPDPNNSQVSRSLERSQPVLTVNSVHNTPPLMTIGNANMAEFRRQKFNYCKNYFSESLSCGFKMCRFQHVPLEGDEKFCIETVIRFSKNLMCLQKAGAVFTGYYQNNPPGVYFSMPVLLSLLWALLKASMLPDVFSVLSVSLTHKLVPNHEFLLALFNFVREKGLMGFVPELLRLTFKIASAGLELNLDCLDCVKNTPEFQQIVRPAASVSVSVNHKLSTSAPCPEFLYLVHSIVELELCAKQEDWRRMGEVFRSICQFKQHPNQVERISGRIAIALLCESRDKLSLPFATFAETVCQNEAEDSMIRSFLGRIGVSLMLRYHKTHQWAKGRRVVEVLSSKVTYSTLKGLFGNEDRASRCYLVTVATELFLLSGSVEGALNTLRENKWFLCSSSWPCEPADLESRSCVLMHLSEKTSHRDTLEVLCNLPGIKEPNNLIDVSRYSPLFNSHLQVCVDKQILLVASKTVEIMLSKHLSVDHALLQTLLQKMGKQNHWLHAREVFRYSLNMGYYPGISAPSGSMALVVPCRLEEVELALTFEMFITVNAMAILQLSETTTSCLSITLKRTQSSESEYLSAGSRLLAAASIPQPKLTVHYTAANSLQDQTFTLDIPSARRWLRYNHSWASETWKL"
misc_feature 1342..1857 /gene="topaz1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:464250" ORIGIN
atgtcgcaaattggtaatgacagtcgtcaaaactgtgaggagtatcttcttgaccaccaacaatgtggaggacactgtaatgaagaagtgaagggcatctcatcaaaatgtaaaactctgtcttctcccaccagtgttggagatgtgaatgatgataatgaagaagaaagccatgattgtggagatgatggggaacaggctagagaagaggaatcgagtccatctgaaacagcaggcagtgaaagggatgaagccaaagcagaggcagcttgtgattctgagcctgacattttggatgaattcacagcttatgaacatgatgttctgcttattgatgtgacccaagatgaccccgagctgtttgaaaacttgcctaagaaaagtctgctgaaactgggtcctatgcgggtcagcgaggcccctaaaaccagacctgctggagtgaagcagatgctgttgccaaggatagatggtgcatcactgaagtttgaacgaagattaacaccaacttacagtcctgatatcacagaggagagcaacagcagaccatggagacctcaaagtagaagcatcactttcaaaacacaagacaacacatggcctgctgcagacaagcaaaccagaaacatggcccagcctgatcccaacaacagtcaagtcagcagaagcctggaaaggagccagcccgtcctgaccgtgaactctgtgcataatacccccccacttatgaccataggaaatgcaaacatggcagagtttagacgccagaagtttaattactgcaagaactacttcagtgaatcactgtcctgtgggttcaagatgtgtcggtttcaacatgtacctctggaaggcgacgagaagttttgtattgaaactgtgatacgcttctccaaaaatctaatgtgtctacagaaagcaggggctgtgtttacaggctactaccagaacaacccaccaggagtatacttctccatgccagtattgctgtcactcctctgggctctgctcaaagccagcatgctgcctgatgtcttctcagtcctcagtgtcagcttgacccacaagttagtgcccaaccatgagttcctgctggccctctttaactttgtcagagagaagggtctgatgggctttgtacccgagcttctgcggctcacgttcaagattgccagtgcaggtctagagctgaatctggactgccttgactgtgtaaaaaatactcctgagttccagcagatagtgcgtccagctgcaagtgtttcagtgtctgtcaaccacaagttatccaccagtgcaccctgtccagagttcctttatttggtccactccattgtggaactagagctttgtgccaagcaagaggactggaggcggatgggggaggttttcaggtccatctgccagttcaagcagcatcccaaccaagtggagcgaatcagcggccgcattgccatagcactcctgtgtgagagcagagacaagctgtcactgcccttcgctacctttgctgagacagtgtgtcagaatgaagcagaggacagtatgataaggagctttttaggaagaattggagtctcactcatgttaagataccacaaaacccatcagtgggccaagggtcggagggtggtggaggtcttaagttcaaaagtcacatactcaacactgaagggattgtttgggaatgaggatagggcttcacgctgctacctggtcactgtggctaccgagctcttcctcctgagtggcagcgtggaaggagctctaaacacactccgagaaaacaaatggttcctgtgttcatcctcatggccatgtgagcctgctgatctggagagtaggagctgtgtcttgatgcatctgtctgagaaaacgtctcacagagacacgctggaggttctctgtaatctgcctgggattaaagagccaaacaacttgatagatgtctccaggtacagtcctctgtttaactctcatctccaagtgtgtgtggacaaacaaatcctccttgtagcatccaaaacagtggaaatcatgctctctaaacacctgtcagtggaccatgcactgctgcagacacttctacagaaaatgggcaagcaaaaccactggctccatgcgcgagaagtcttcagatactctctgaatatggggtactacccgggcatatcagctccctctggttccatggcgctggttgtcccctgtcgactagaggaggtggagttggctctcacctttgagatgttcatcactgtcaacgcgatggccattctacaactttcagagaccaccacttcctgcctcagcatcacactgaaacggactcaaagcagtgagagcgaatacctctctgctggtagccgcctcctcgctgcagcttccatcccccagcccaaattaactgtgcactacacagcagctaactccttacaggaccaaactttcacacttgacattccctcggctcggcgatggctccgctacaatcactcatgggccagtgagacgtggaaactgtgaaccaaatggttacactaccgcagttcctgtggtgtttttctcttaaaacaggttatgttatacagtcatcggctgaatcttgggaaaacagccaatgaaattaggaaaacgaaagctagtgtatttctgtttccggcactaatggtagtattttattaagaagcagaaaatgtttcagtcaccactgaagcctgttaccagaaccagtttgtttttaccatcctaagaaaacacttttgttgacttttgttttaaaatgttttttttgttccctcttgatttctcagctcttgtaattgtcactgtttgtgtcatttcctgttggaaataatggctctgttatggaacagagtccagcataaatttgtagcgttcttacaaatactgtgctttgtttacttaattgtaaacatcagagtgtaaatatgtatatatttataatggtgtttagtctttgacaataatgttactgtattatatttctgactggtgccagttcaggaggtgtgatttacattttcttttgatgtttttttttatttaaaaagtatagctttctagtgaatcttgtcaacaggaaaatgagagctggaaaatattttctgggatttttaattttattgagcctttgttgtaccagtaaactcctcactgagaataaaaatctctttttcaaaagtatcccagcctggctaagacaggcagcaacaaagtttcagaacagtaccataaatacgagaatataatgggttgttaaaatacactgttggcactttattaggaacacttagctaaaactaagtcaactgtatgatcatttttagaggctgtaatttgtatttctgttaacgtgtattccactgtacagagagctgcttctgttctttagcctcgattaaacaatgga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]