LOCUS       XM_019984223            5170 bp    mRNA    linear   MAM 12-JAN-2017
DEFINITION  PREDICTED: Bos indicus testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), mRNA.
ACCESSION   XM_019984223
VERSION     XM_019984223.1
DBLINK      BioProject: PRJNA360096
KEYWORDS    RefSeq; corrected model.
SOURCE      Bos indicus (Bos taurus indicus)
  ORGANISM  Bos indicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bos.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_032671.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Bos indicus Annotation Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-242               AGFL01172381.1     50706-50947
            243-360             AGFL01172381.1     50949-51066
            361-363             AGFL01172381.1     51675-51677
            364-2803            AGFL01172381.1     52138-54577
            2804-2865           AGFL01172381.1     65298-65359
            2866-2993           AGFL01172381.1     66098-66225
            2994-3058           AGFL01172381.1     73067-73131
            3059-3201           AGFL01172381.1     75009-75151
            3202-3287           AGFL01172381.1     76672-76757
            3288-3413           AGFL01172381.1     77489-77614
            3414-3477           AGFL01172381.1     80077-80140
            3478-3629           AGFL01172381.1     85953-86104
            3630-3722           AGFL01172381.1     86310-86402
            3723-3838           AGFL01172381.1     88764-88879
            3839-3905           AGFL01172381.1     92217-92283
            3906-4080           AGFL01172381.1     93421-93595
            4081-4181           AGFL01172381.1     94323-94423
            4182-4347           AGFL01172381.1     97344-97509
            4348-4512           AGFL01172381.1     103591-103755
            4513-4716           AGFL01172381.1     105458-105661
            4717-4900           AGFL01172381.1     107793-107976
            4901-5170           AGFL01172382.1     2819-3088
FEATURES             Location/Qualifiers
     source          1..5170
                     /organism="Bos indicus"
                     /mol_type="mRNA"
                     /isolate="QUIL7308"
                     /db_xref="taxon:9915"
                     /chromosome="22"
                     /sex="male"
                     /tissue_type="peripheral blood mononuclear cells"
                     /geo_loc_name="Brazil"
                     /breed="Nelore"
                     /note="animal owned by Agropecuaria Quilombo Inc."
     gene            1..5170
                     /gene="TOPAZ1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 55% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:109575967"
     CDS             12..5120
                     /gene="TOPAZ1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: testis- and ovary-specific
                     PAZ domain-containing protein 1"
                     /protein_id="XP_019839782.1"
                     /db_xref="GeneID:109575967"
                     /translation="

MPRAPPSGPTTAPGREDDARGLRKRSRRPGLGEAGGCGPEAEGLEESRQKRRMVARASGREEVESDKSGEASGTGKAYLARRRAEGLGGHGGLSDPSDRSTLEAAKEAELPLQAGGHTKEKRKVTEASSDDPQPGIDLVRKESLTSSESFPTVECSEFQSMAFLQSLGKERLVEGIKRRIRIKKCKSLESPALKMTENKATQNSKVEFQDELYKNTLKYSCNSLSPGVENNSVLKLHDCSCLSHSKDCNDENNLAYKPDGGCMHVPENSSKSKKENPRSLIDKTDPSNIPQLLQTEENVMRVSQLLLEENDSYLSKNNGLFSCLQSEKTKHSIEESSIGRKSRKRMKVSEKGNGMVIEMKFSNMCNKSELMLQGNQTGADGKETEILEAKKSSLKVLRKVNNNTLSPMDPLLSLPETGKKTSPEHCANAVFQKALEQLSKEETKNVSQPLGCTSMDPPEDYFKSMKNSLVKSLSDCFPIEKRSSRESLKNEAEESKYSCQRTIPMTGKRTWPCYSCARISAQCWKKASLPQSSRQDDFLKHQMNQTHLTDSKLMLQSSVTETNSASSSIEKLDSNLNCLPSVSTVEPTSVVIKEPIVNDDEKMKSEELSRSASEVVSNTTEDTSLTNMTHNLTGSKKKDRGNLTKLNLTVASQDGQEANNSTSKTVHRKACITKQALVVPDLVKILNTGRLTNFKIPLLKNKTEKRKEINAKSSEREVYSPLELLDSVSGAEVRQSRTKENAVTVTSGPQSLSIQRSVIPVQASSDSFCSKNSCIIAPSFLKQGNNKQPSNHISASGRIISNNAAGSLTVENNTFSCDPGCIEKNPTFYSNEQEPFKAVSSEVSGRKMTENFSEIKVGFPDILKAYEDDVLLIDVIQDDPDLFGVSNEGELSFPSEVPMISQEPNVAEEHQSTDSKHMELPDKKEPSNDLRELPVPDPGSMKSEICASLSAASEIKHDSKDANISLGEVTHETSSNEKPRGLSEQTKSSDLDEKCRFSDKVAIREEKETISEVCRRDSKNTEIMVGECHLAALVSKPLCLPVPLPPLNLNAHQEDTLLNPQMNDFRLPGKHSVLKLQNPEICEIFKREKNVGVFQKPLGLMIPHRYCKFHFNTLRGCERSQCKFGHVPEQGDEKVCMDVFKKYISINELCLLQRAANMFMEYYRKFLPGIHFDLQVLNDLLSSLLKHCLLKEVFQVMNLCIMIKMLPALKILLKIFEYVATMKLRNAVPALINIFCKLXEAGMVLDPEHFNYIVKLLYQVQASKQEITAVLEMKSRLHMRQFKKNWKCDLEAALNEIEHCKEKGDWTKLGNVYLNIKMSCEKFADFQRFCACIAETLTKDCKEERPGVPFCEFAETVSKDLQNSEVDKTLLGRIGISAMYFYHKLLQWSKGRKVLDKLYELKIHFTSLKGLIGPEKLAPRCQIVNIAAEIFLKSGSLDGAIWVLRESEWIINTPVWPCDRLDVLNRHNLLCTIAHEILAKSLYRQTFEVLQNLPGFQNSQETVEVSQYSLLFNKLLDACIESNSLGMSSSVAEFMISKSIPIDFSFLRRLITSLGRSCLWLKARAHYKSALSLGCYPPLEGNLYRKLLLIPSYLSEIEMLLAIEIFLVSNASSIQSPGTSTQMLQIVLKRSEENKSRSKDDYQAAVERLITAARISDPKLFIKHMTVNVNKEQVYSLEQCSALKWLKENMKWAGKVWLFNNH"

     misc_feature    3900..4427
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
ORIGIN      

gccccgggcggatgccgcgggctccaccctcgggccccacgacggccccggggcgtgaagacgacgctcgaggcctgaggaagagaagccggcggccagggctaggcgaggcaggaggctgcggccctgaggcggaggggctcgaggagagcaggcaaaagaggaggatggtggctcgggcgtctgggagagaagaggtggaaagtgacaagtcaggtgaggcatccgggactgggaaggcctacttagcgaggcggcgagcggaggggctggggggacatggcggcctttcagacccatctgacaggtccactttagaagcggcgaaggaggcggagctcccattgcaagcgggaggacacaccaaggaaaaaagaaaagttactgaagcctcaagtgatgatccacagccagggattgacctggtaagaaaggaatcattaaccagttcggaatctttcccaacagtggaatgcagtgaatttcaaagtatggctttcttgcagtctttgggtaaggaaaggttggtagaaggtattaaaagaagaattcgaattaaaaaatgtaaaagcttagaaagcccagctctcaaaatgactgaaaataaggctacacaaaacagtaaggttgaattccaagatgaactgtacaagaatactctgaaatattcttgtaacagcttgtcacctggagtagaaaataattctgttttaaaattacatgattgcagttgtctctcccattccaaggattgtaatgatgaaaataaccttgcatataaacctgatggaggatgtatgcatgtaccagaaaattcctcaaagtcaaagaaagaaaaccctaggagtctcatagataagactgatccaagcaatattcctcagcttttacaaactgaagaaaaygtaatgcgagtaagtcagttattgcttgaagaaaatgattcgtacctaagtaaaaataatggcttattttcctgccttcaaagtgaaaaaactaaacattcaatagaggagagcagtattgggagaaaatccagaaaaaggatgaaggtgtctgaaaaaggaaatggaatggttattgagatgaagttttctaatatgtgtaacaaatctgagctgatgttacaaggaaaccaaacaggtgctgatggtaaagaaacagagattttagaagctaaaaaaagttctttgaaagttttgagaaaagtaaataataatacgctgtcaccaatggatcctttattaagtcttccagaaacagggaaaaaaacaagtcctgaacattgtgcaaatgctgtgtttcagaaagcccttgagcaactttcaaaagaagaaacaaagaatgtttcacagcctttaggatgtaccagcatggatccaccagaagattattttaagtcaatgaaaaactcattagtgaagtcacttagtgattgctttcctattgaaaagaggtcttctagggaaagcttgaagaatgaagctgaagaatctaaatatagctgtcaaagaacaataccaatgactggcaaaagaacttggccttgttattcatgtgctagaatatctgcccagtgttggaaaaaagcttccttgccacaaagttctaggcaggatgattttcttaaacatcaaatgaatcaaactcacttaactgactccaaattaatgctacaaagttctgtaacagaaacaaacagtgcatcttcaagtatagaaaaattggattctaatttaaattgtttaccttcagtctctacagtggaacctacttcagtggttataaaggaacctatagtcaatgatgatgaaaaaatgaagtcagaggaactaagcagaagtgcatcagaggtagtttctaatactactgaagatacttcattgactaatatgactcacaacttaacaggaagtaaaaaaaaagatagagggaatttaacaaaactgaatttgacggtggcttcccaggatggtcaggaagcaaataactctacaagcaaaactgttcatcgaaaagcatgcattactaagcaagcactggttgttccagacctagttaagatactgaacacaggacggctgactaattttaaaattcctttactyaagaacaaaacagaaaaaagaaaagaaattaatgccaagtcatcagagagagaagtatatagtcccctagaacttcttgacagtgtatcgggagcagaggtaaggcagagtaggactaaagaaaatgctgtcacagtaacttcaggacctcaatctttgagtatacaacgtagtgtaattccagtgcaagctagttctgactcattctgcagtaagaattcctgtattattgctccgagctttttaaagcaaggtaataataaacaaccatctaaccacatctctgcatcaggccgtattatttctaataatgcagctggttctctcacagttgaaaataatacattttcttgtgatcctggatgtatagagaaaaatcccaccttctattccaatgaacaagaaccattcaaagcagtttcctctgaagttagtggtagaaaaatgactgagaacttttcagaaattaaagtggggtttccagatattctgaaagcatatgaagatgatgtcctcttaattgatgtaattcaagatgacccagacctctttggagtctccaatgaaggggaactctcatttccttcagaggttcccatgataagccaggagcccaatgttgctgaagagcatcaatcgacagactccaagcacatggaacttccagacaaaaaagaaccaagcaatgacttgagggaactgcctgtaccggatcctggatcaatgaagtcagagatctgtgcttccttgtcagcagcaagtgagataaaacatgattccaaagatgcaaacatttccttaggagaagttactcatgaaacttcttcaaatgaaaaaccgagaggcctaagtgaacagacaaaaagttcagacttggacgaaaagtgtagattttcagacaaggtagctattcgagaagaaaaagaaactatttctgaagtttgcagaagggattctaaaaatacagagattatggttggtgaatgtcacttagcagcactggtctccaaacctctgtgcttaccagtgccattgccgcctttgaatcttaatgctcatcaggaagatacattactgaatccacagatgaatgatttcagattaccagggaaacattctgtcctaaagctgcagaatcctgaaatttgtgaaatatttaagagggaaaaaaatgtaggggtgttccagaagccactagggttgatgataccccacagatattgcaaatttcattttaatacgttacgtggctgtgagcgatcacagtgcaagtttggtcacgtgcctgagcaaggggatgaaaaggtttgtatggatgtgtttaagaaatatataagtatcaatgagctgtgtttgctacaacgtgcagcaaacatgtttatggagtactacagaaagtttcttccaggtatacactttgatttacaagtattaaatgaccttctaagttctttrctcaaacactgtttattgaaagaagtatttcaggtcatgaacctctgcataatgattaagatgctgcctgctctgaaaatattactaaaaatatttgagtatgtggcaactatgaaattaaggaatgctgtacctgctttaattaatatcttttgcaagctcsttgaagctgggatggtacttgacccagaacactttaactatattgttaagcttttataccaagtacaggcttccaagcaagaaataactgcagttctggaaatgaaatccaggttacacatgaggcaatttaaaaagaactggaaatgtgacttagaggcagccttgaatgaaatagagcattgtaaagaaaaaggtgactggaccaaactgggaaatgtataccttaacataaaaatgagctgtgaaaaatttgcagatttccagaggttttgtgcttgtattgctgaaacactaacaaaagactgtaaagaagagcgaccaggtgttccattttgtgaatttgctgaaacagttagcaaagatctgcagaatagtgaagtagataaaactttgctgggaagaatcggaatcagtgctatgtacttctatcacaagctgttgcagtggtccaagggaaggaaggtcttagataaactatatgaattaaaaatacattttacaagtttaaaaggacttatagggcctgagaagttagcaccaagatgtcaaattgtgaatattgcagcagaaatttttctaaaaagtggaagcctagatggtgccatttgggtattaagggagtctgagtggatcattaatacaccagtatggccttgcgatcgactggatgtgctcaatcggcataatctgctctgtacaatcgcacacgaaatcttagcgaagagtctttacagacagacatttgaagttttgcaaaatctaccaggttttcaaaattctcaagaaactgtggaggtctcacagtatagcctactttttaataaacttctagatgcctgtatagaaagcaacagcctcggtatgtcatcctctgtagcagaattcatgatttcaaagagcatccctattgatttttcctttcttagaagattaattacttctttaggaaggagttgtttatggctcaaagccagagcccactacaaaagtgctctttcactgggttgctacccaccactggaaggaaatttgtaccgaaaacttctcctgattccatcctatttgtctgaaattgaaatgcttttagctattgaaatcttcctggtatctaatgctagtagtattcagagtcctggaacttctacacagatgctgcagatagttttaaaaagatctgaagaaaacaaatctcggagcaaggatgattatcaagctgcagtggaaagattaattacggctgctcgtatatcagatccaaagcttttcattaagcacatgactgtcaatgttaataaggaacaggtttatagtttggaacagtgttctgccctgaaatggttgaaagagaatatgaagtgggccggaaaggtttggcttttcaataaccattagttataaaggcttttttttttttttaagttcaagtaatcattgttgaaaat

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