LOCUS       XM_017734580            6985 bp    mRNA    linear   VRT 03-AUG-2016
DEFINITION  PREDICTED: Corvus brachyrhynchos testis and ovary specific PAZ
            domain containing 1 (TOPAZ1), transcript variant X2, mRNA.
ACCESSION   XM_017734580
VERSION     XM_017734580.1
DBLINK      BioProject: PRJNA253849
KEYWORDS    RefSeq.
SOURCE      Corvus brachyrhynchos (American crow)
  ORGANISM  Corvus brachyrhynchos
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Corvus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_008238330.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Corvus brachyrhynchos Annotation
                                           Release 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6985
                     /organism="Corvus brachyrhynchos"
                     /mol_type="mRNA"
                     /isolate="BGI_N302"
                     /db_xref="taxon:85066"
                     /chromosome="Unknown"
                     /sex="female"
                     /geo_loc_name="USA"
     gene            1..6985
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 13 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:103615891"
     CDS             308..6382
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="testis- and ovary-specific PAZ domain-containing
                     protein 1 isoform X2"
                     /protein_id="XP_017590069.1"
                     /db_xref="GeneID:103615891"
                     /translation="

MARLRSGKVVRASEVKPVDPEVTSPGSSGAGCEAGEKLVVRRSPRLAPKRKPEQPFPSFPQPARLSGASFKRFAPPVPEQKEQGENNRKFPGKKTKGIQHRKSPRRSKGVASPVSDTAECDDWQAAATAAAMCWEETVRRGTGQSQQLFFSGTTLENKFSAGIERNESFSEDLNLSDFQEGSRSSGKEGKYSCMEIKLQVPSLKGEIESTERHRISCFPEPEDLQPRKVTWSTGMKCTDSGMTQDMQIPDLKKNLGAQEIMPEPKPEEEVDIPENLMGCPLVRSRTLGIQEKEKRCLGRKRRRSVVKPKVHGPRERGSSALLEQHTLFPESRKRALSMRNRNALLSQRLQGPSGQEQPTTRRRTQKRCMKEEQQSSSHQKGPDSPGEREEQLKAIEQDSGTLESVKKVKTKQNRAEDSQEKESHYSRSSAVSTSGGTESKSFLCHAVTKEPGVQYKKRQNRSGRIKHLQNLSVTAAEKVMNTSAKCDAEHCSSALKRCSGLLCATGKNPFVMLEDCSYINTLVKPSASGTTNSYKLNGFFHVAHRTGDLTDRICSTSRMQNERSLIKGGLSSNKEKNENEEGCFSSCLSESNKCLRGKNWNTGRKPRKNTKITEESADMASKWKKCELQTEAAVAMSSSFAVSGLNHTLSASCDHTSDFHTEKSTHEVQTVSAWRNNSTKLLAFETGFKKTSELSVIAKGENSTRVAHCAAASDSLRVLAHIHDVSDCHKSKTGGNLNKVNKKLLQFTCQRTVPMTGKKIWPVESCARTSEWFLKNRGSISERKRLLKAALEDSSDKSSVKAVGHSEVTGNLRQLDLYTSLADITKEIMHKKIDPNIDCQTSLETPESSSVDIYETLTMSNENGESLVNTDRSAVALNHDDVQEVKATLNFTAKQKDENEGDVTERNLSVTVQNGTTKQKDKDEGDVTNRNLSVTVQNRTTKQKDKNEGDVTNRNLPATVQNGTSTDNTSRINSSPEVSVVNQTFAHLNLIKPLTSGNLTKFKIPLCRNKLESKKLESVHSFERKTCSPLELLESTSAPGRQKTGEDTFLVSSEQCPLPVMSDATSPPSIEKKTDDIDSKDFQRDGSVKFSNEMSVLPESFSAYPHPLRDGQLESSVPDFCGTECVLKSSFPGHSWNAVDHLVGLEINDDRKSRGNFSQHRSENLPDILEAYNQDILVIDVIQNDPDLFGTSNEEEFAPAYCENCPVKASSANCIKDTRQCIKPESPVTSEKTYSVENSFRCMQESGVSSDTENSHYLVLKAADVKTHNSSRGSSPLGDVSEDLLKDRQQSKLDELLKSFDVDEKFKLADGVPDVEEENKSEAEKSDCKYKGSCELLSGLSLNDRKVNLFSEATEMKSWTNGYKSSGRSTLLPLKNCGDFEPWKTEKNAIASHSVQQILDALNLPRRYCRYYFMTSRGCERAKCWFCHVPGQGEEKICMAILRTYISIKESGLLKRAVQIFVQYYKEVTPGTDFASEVLNGLLVSLLNNCLLQEVFQILNAIVQIKTLPAVDVLLKVFEHVASLNIRKAVPALISTFCKLIDAGMYLELEHFDYIIKLLHQLQVSSWEMSSVLNIKSRIKERYFEKTWIFDFNLAVAEIQHCKEKRDWSKMGALYLNARTGCEHFDDLQKLFLSMAEILTKDSETDRPGVPFCDFADAVMKSSHHNEADRLFIGRTGISVMYSYHKVLQWVKGRKVLDKLHELQIHFTLLKGLVGAARSASRCQIVNKAAEIFLHSGNLDGATRVLRESEWITDAPLWPCDKMDILNRHNLLCAIVHKYLRKSLYRQAFEVLQNLPGLQKHSDIVDASQYSCLFNKLINACFENKNLGVSSSAVDFMLSKKIAIDFFLLRRLITALGRSSLWYKARTYYKNALSLGCYPELQGNLCHKLLKIPSYLSEVEMLLTIEIFLVSNASDIQSLRTTSQTLQIILKRSEDQTVQNNSAYHVAVERLIQAARLSDPKLFLKHMTMNVNMEEVYSLEHSSALKWLHENMKWAEKKFHVPNRTKLQCGMETSLERWKKYPEE"

     misc_feature    5102..5629
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
ORIGIN      

cggccttcttgagtctgaagaggtgcgagactgcttccttcaccgccctgctctgtgagaggttgctccgggtgtgtgtttgggggtggggggatgtgtgtcagaaagggcttgtcggtggccgtggtttttctctgggcggcctgggctcccctggttgtcccctgaggcggcagcctgggaggggttgtccccacctccgggtcgggcctacagccactgcgggtgctgggctagcgagattgcagcgagaggtgcgctggcgagtgggttttgtgggttctgctgctgtctctgcaccaccgagatggcgcggttgaggtcagggaaagtggtgagagccagcgaggtgaagccggttgatccggaggtcaccagccccggctcttctggtgcagggtgtgaggcaggggagaagctggtagtgaggcggagccctcgcctggcaccaaagagaaagcctgagcagcccttcccttcctttccgcaacctgccaggctttccggtgcttcctttaagcgttttgctcctcctgtgcccgagcagaaggagcaaggtgagaacaaccggaaattcccaggtaaaaaaaccaagggaatccagcacaggaagtctcccagaagaagcaagggtgtagcttcaccagtttcagacacagctgagtgtgacgattggcaagcagcagccacggctgcagcgatgtgctgggaagagaccgtaagaagagggacaggtcaaagtcaacagctgttcttctcaggaactactttggagaataagttttcagcagggattgaaaggaatgaaagtttctcagaagacctgaacctctcagatttccaggagggttcaaggagctcaggaaaagaaggcaaatattcctgtatggaaataaaattacaagtcccatccttgaagggggagattgagagcacagagagacacagaatttcttgttttccagaaccagaagatctgcaacccagaaaggtcacatggagtactggaatgaaatgcactgactctggaatgacacaggacatgcaaatcccagatcttaagaagaatttgggcgctcaggaaatcatgcctgaaccaaaacctgaggaagaggttgatataccagaaaacttgatggggtgtccattagtcagatcaagaacgctagggatacaggaaaaagaaaagagatgcttgggcaggaaaaggaggagatcggtggtgaaaccaaaagtacatggtcccagagagaggggtagttctgccttgctagaacagcatacactgtttccagagtctaggaaacgagctctgagtatgaggaacagaaatgcactcctgtcacagcggctacagggtccgagtggacaagagcagccaacaaccagaagaaggactcagaagcgttgcatgaaagaagagcagcagagctcaagccatcagaaaggaccagacagcccaggggaaagggaggaacaattgaaagcaattgagcaggactctggtactttagagtctgtgaagaaagttaagacaaagcaaaacagggcagaagattctcaggaaaaggaatctcactattctagatcttctgcagtttctacttcaggtgggactgaaagcaagagctttctatgccatgctgtaacaaaagagcctggtgtgcagtataaaaaaaggcagaacagatctggtcgaatcaagcacttgcaaaatttaagtgtgaccgcagctgaaaaagtgatgaatacatctgcaaaatgtgatgctgaacattgcagtagtgccctaaagcgctgtagtggcttgctctgtgcaacaggaaagaatccatttgtgatgttagaggattgtagttacatcaatacattagtgaagccttcagctagtggaactaccaacagttataaattaaatggattcttccatgtagcccatcgtactggagatctgactgatagaatttgcagcactagtagaatgcagaatgagagatcactcataaaaggtggtttatcatctaataaagaaaagaatgaaaatgaagaaggctgtttttcaagctgcctgagtgaaagcaataagtgtttaagggggaaaaactggaatactggtagaaagcctagaaaaaatacgaaaatcacggaggaatctgcagacatggctagtaaatggaaaaagtgtgagttacaaacagaagcagcagttgccatgtcaagctcgtttgcagtttcaggactaaatcatactctgtcagcttcatgtgatcatacatcagattttcatacagaaaaaagtactcatgaagtacaaactgtatcagcctggagaaataatagtaccaaattacttgcatttgaaactggctttaagaagacatctgagctctctgtaatagcaaaaggagaaaattcaacccgtgtggcacattgtgcagctgcttcagatagcctgagagtgttagctcacatccatgatgtttctgattgtcacaaaagcaagacaggaggaaatttgaacaaagttaataagaaattgctgcagtttacctgtcaaagaacagttcccatgactggtaaaaaaatttggcctgttgaatcttgtgccaggacttctgaatggtttcttaaaaatcgtgggtccatctcagaacgaaaaagacttttaaaggctgctttggaggattcctctgataaaagcagtgttaaagctgtaggacatagtgaagtgactgggaatttgagacagttggatttgtatacatcattggcagacattacaaaggaaattatgcataaaaagattgatccaaatattgactgtcagacttcacttgaaacaccagaatcctcttctgtggatatttatgagactttgacaatgagcaatgaaaatggggaatcactagttaatacagatagaagtgctgtggctcttaaccatgatgatgtgcaagaagttaaagcaaccttgaattttacagcaaaacaaaaagatgaaaatgaaggagatgtaacagaaagaaacctgtctgtgacagtccagaatggcacaacaaaacaaaaggataaagatgaaggagatgtgacaaatagaaacctgtctgtgacagtccagaatcgcacaacaaaacaaaaggataaaaatgaaggagatgtgacaaatagaaacctgcctgcaacagtccagaatggtacttctacagataacacaagcagaataaactccagccctgaagtatcagtagtgaaccagacatttgctcatttaaacctaattaaaccattaacctctggaaaccttacaaaattcaaaattcctttatgcagaaacaaacttgaatccaagaaattggaatctgtccattcatttgaaagaaaaacttgcagtccactagagcttcttgaaagcactagtgctccaggaaggcagaagacaggtgaagatactttcttggtgagttctgagcagtgtcctcttcctgtcatgagtgatgcaacatctccaccttccatagagaaaaaaacagatgacattgacagtaaggacttccagcgtgatggctctgtaaaattctctaatgagatgtctgtgctccctgaaagtttttcagcatatccgcatcctcttcgtgatggacagctggagtcatctgtgccagatttctgtggtactgaatgtgtgctgaaatctagttttcctggtcattcttggaatgcagtcgaccaccttgttggattagaaataaatgatgatagaaaatcaagagggaatttttcacaacacagaagtgaaaatttaccagatatccttgaagcttacaaccaagacattcttgtcattgatgtgattcagaatgaccctgacctttttggaaccagtaatgaagaggagtttgcacctgcatactgtgaaaattgtccagtgaaagcatcctctgcaaactgcattaaagacacaaggcagtgtattaagcctgagtctcccgttacctcagaaaagacctattcagtagagaatagttttagatgcatgcaagaatctggagtgtcaagtgatactgaaaattcccattatttggtgttaaaagctgcagatgtgaaaacccacaactcctccagaggaagcagtcctttgggagatgttagtgaggaccttcttaaagacaggcaacagagcaaactagatgaacttttgaagagttttgatgtggatgaaaagttcaagcttgcagatggagtgcctgatgttgaagaagaaaataagagtgaagctgaaaaaagtgactgtaaatacaaagggagctgcgaattgttatcaggattgtcattgaatgaccgaaaagtaaatctcttcagtgaagctacagagatgaaatcctggacaaatggttacaaatcttcaggaagaagtactttactgccattgaagaattgtggagattttgagccatggaagacagagaaaaatgcaattgcttctcattcagtccagcagatccttgatgcacttaacttgccccgtagatactgcagatattatttcatgacttcacgtgggtgtgaaagagcaaaatgttggttctgtcatgttcctggacaaggggaagaaaagatttgcatggcaattcttaggacatacattagtatcaaagaatcaggtctcctaaaacgtgcagtccaaatatttgtgcagtactacaaagaagttactcctggtacagattttgcttctgaagtgctgaatggtcttcttgtttcattgctcaacaactgtttgttgcaggaagtatttcagatattgaatgcaattgtacagatcaagacactgccagctgtagatgttcttctgaaagtttttgagcatgtggcttctttgaatataagaaaagctgtgcctgcattaatcagtaccttttgtaagctcattgatgctggtatgtaccttgagttagaacattttgactacattattaagttactccaccaattgcaagtttccagttgggaaatgagttctgttttgaacataaaatccagaattaaggaaagatattttgaaaagacatggatttttgacttcaatttggcagtggctgaaattcagcattgcaaggagaaaagggattggtccaagatgggagctttgtatcttaatgcaagaactggatgtgaacattttgatgatcttcagaaattatttttatctatggctgaaattctaaccaaagattctgagacagacagaccaggagtccctttttgcgattttgctgatgcagtaatgaaaagttcacaccataatgaagcagacagacttttcattggaaggactgggataagcgtaatgtattcgtatcacaaagtactgcagtgggtaaagggaaggaaggttttggataaactgcatgagctacagatacattttacactcttgaaaggacttgtaggtgcagcgaggtcagcatcgaggtgtcagattgttaataaagctgcagaaatctttcttcattctggcaatttggatggagcaacaagggtattgagagagtcagagtggatcacagatgcaccgttgtggccctgtgataaaatggacatccttaatcgacataatctgttatgtgcaatagtgcacaaatacttgaggaagagtttgtacaggcaggcatttgaagttctgcagaacttaccaggtttgcagaaacattctgatattgtagatgcttctcaatacagctgcctttttaacaagctgataaatgcctgttttgagaacaagaacctcggggtttcgtcttctgcagtagacttcatgctttccaaaaaaattgctattgatttttttttacttagaagattaatcacagctttgggaagaagttctttatggtataaagctaggacctattacaaaaatgctttatcgctgggttgctacccagagctgcagggaaatttatgtcacaaacttctgaagattccatcttacctgtctgaagttgagatgctgttgaccattgaaatatttcttgtttcaaatgccagtgatattcaaagtctgaggactactagtcagactcttcaaataatactgaaaagatctgaagatcagacagttcagaataacagtgcctaccatgtggcagtggagaggctgatccaagcggctcgtttatctgatccaaagctttttcttaagcatatgacaatgaatgttaatatggaagaagtttacagcctggagcattcatctgctctaaaatggcttcatgagaatatgaaatgggctgagaagaaattccatgtgccaaacaggacaaaactccagtgtggaatggaaacaagcctggaaagatggaaaaaatatcctgaagaataaagttaagtacaacagaggcaatgcagttttgcagagccagccactcagtagacaatatccatacttttgctttctcccagtataagttaagctgaaaaaacttccatgtttgacattaagcaacttatttgatataatttttcatatagaaaataaaatgtatgtttacctgtttgcagagagagatggaaaaatgtgcaaataaaaccttccctgtgctgtgctcagtagcttggagtaaacaacgctgtgctccttcagtatgttgttagatacatgagaaattccctctgtgaaaatcttcagttttcactgattacacactatgctcttggaaagattatttttgttgggtatggacagtttcttgtaactaaaacagaataatgtggttcagaagacttaccacaattttatttcaaagtattgataattttgagagtttcaaaatgcaggatggaggtgagaagctggaaataggagcttgaaagttttatggtgttttataaagagcaacgagggggaaggggaggagcattttggaggagttcttaagttgttaataaacgttttttattacttacataaagcattcaaaatatc

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