LOCUS       XM_014946083            1360 bp    mRNA    linear   VRT 09-DEC-2015
DEFINITION  PREDICTED: Calidris pugnax VCP-interacting membrane selenoprotein
            (VIMP), mRNA.
ACCESSION   XM_014946083
VERSION     XM_014946083.1
DBLINK      BioProject: PRJNA305421
KEYWORDS    RefSeq.
SOURCE      Calidris pugnax (ruff)
  ORGANISM  Calidris pugnax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes;
            Scolopacidae; Calidris.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_015090873.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Calidris pugnax Annotation Release
                                           100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1360
                     /organism="Calidris pugnax"
                     /mol_type="mRNA"
                     /isolate="Ruff"
                     /db_xref="taxon:198806"
                     /chromosome="Unknown"
     gene            1..1360
                     /gene="VIMP"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:106890328"
     CDS             33..608
                     /gene="VIMP"
                     /codon_start=1
                     /product="selenoprotein S"
                     /protein_id="XP_014801569.1"
                     /db_xref="GeneID:106890328"
                     /translation="

MELGGGEAAAGPGQAALGQGGLEVLQHTVGSLLSSYGWYILLAAVAIYLLMQKVSQGLAARQSAQAGAADAAVEPDVVVRRQEALAAARLRMQEELNAQAERYKEKQRQLEEEKRRQKIAMWESMQEGKSYKGNLKLSQQEVESGASTSSAVPKSKPNKKPLRGGGYNPLSGEGGGTCSWRPGRRGPSAGG"

     misc_feature    33..605
                     /gene="VIMP"
                     /note="Selenoprotein S (SelS); Region: Selenoprotein_S;
                     pfam06936"
                     /db_xref="CDD:462043"
ORIGIN      

tggacgtgaggcggcagcggcggcggcgggcgatggagctggggggcggcgaggccgcggcgggcccggggcaggcggcgctgggccagggcggcctggaggtcctgcagcacacggtgggctccctgctgtccagttatggctggtacatcctcctggccgctgtcgccatctatctcctcatgcagaaggtctcgcaggggctggcggcccggcagagcgcccaggcgggagcagctgacgcagctgtggaacccgatgtggtggtgagaaggcaggaagccttggcagcagctcgcctcaggatgcaagaggagttgaatgcacaagcagaaagatacaaagaaaagcaaagacagcttgaagaagagaaacgaaggcagaagatagcaatgtgggaaagtatgcaagaaggaaaaagctataaaggaaacctgaaactgagtcagcaagaagtagaatctggtgcctccacctcatcagcagtcccgaaatctaaaccaaacaaaaagcccttgcgaggaggtggctataaccccctctctggagaaggaggtggaacttgttcctggagacccggccggagaggcccatcagcaggtggatgaggctaaagcctccctagtgtctggtgtcactagggcttgttcttacccactgtctaactgcctacagtttgcgtgtcacagcgactcctttgggatggggcttagtgcaggtgttaacttgaaaacagatttacaccatttccacatagtaatgcagaagctgataactacgcaagaaaaatagccagtcctctccgagaggatgaagaagaaacaatttcagtgtaatcagttcattttcactctcctgtagaggagaagcgtagtctccagccaaggtgaatcacctgggattgggagatctggtttctggggctggctattcaaaaagactggcctcgggcacatttaattatctctgctccgtttatttctgtaaaacgaggatacttgccctcctcagacatgtgtcaccagatttactgtgtttggctggaaggtacttcagagggaaagaataatatcatcggcaggagccttgaattttaggaggagggactttcagaaaaaaaacagatgaactgacagacgccacggatttgaaccacaggtcagttactgcagaagagtctctgtgacaagctaccttgaatgatgttttccttataaatggtaaacaaaccagtgaggattactgatgctagacagcagatagggggtttcttgctattccttttttttttttttatttcaaccgctttgtaaaaacaaaacactattaatattaaatataattgcaaagaaatcataaa

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