LOCUS       XM_014937675            2446 bp    mRNA    linear   VRT 09-DEC-2015
DEFINITION  PREDICTED: Calidris pugnax testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), mRNA.
ACCESSION   XM_014937675
VERSION     XM_014937675.1
DBLINK      BioProject: PRJNA305421
KEYWORDS    RefSeq.
SOURCE      Calidris pugnax (ruff)
  ORGANISM  Calidris pugnax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes;
            Scolopacidae; Calidris.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_015090803.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Calidris pugnax Annotation Release
                                           100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446
                     /organism="Calidris pugnax"
                     /mol_type="mRNA"
                     /isolate="Ruff"
                     /db_xref="taxon:198806"
                     /chromosome="Unknown"
     gene            1..2446
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:106885461"
     CDS             546..2315
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="testis- and ovary-specific PAZ domain-containing
                     protein 1"
                     /protein_id="XP_014793161.1"
                     /db_xref="GeneID:106885461"
                     /translation="

MTLRGCERAKCWFWHVPEQGDEKICMAILRTYISIKESGLLKRAAQIFVKYYREVTPGVDFASQVLNDLLISLLENSLLQEVFHLLNVTVQINTLPAVGVLLKVFEHVASLNITDAVPPLISTFRKLIDAGMFLEFEHFDRIIKVLHQLQVSSQEINIVLNIKSRFQERHFEKNWLFDFNLAVAEIQHCKEKSDWMKLGALYVNARTGCEHYNDLQKLSLCIAEILTKDSETHRPEVPFCDFADAVIKNPQHNEEDRIFIGRIGISVMYSYHKVLQWIKGRKVLDKLCEMQIHFTVLKGLLGAERLASRCQIVNKAAEIFLKTGHLDGAMWVLRESEWTTNAPMWPCDKMDILNRHNLLCTLVDKYLGKSLYRQAFEVLQNLPGFQNHSDTVDVSQYSCLFNKLINACFESKNLGVSSSAVDFMLSKNIAIDIFLLRGLITALGRSSLWSKARTYYKSALSLGCYPPLQGNLYHRILTIPSSLSEVEMLLAIEIFLVSNASVIQSPMAISQTLQIILKRCEDQTVQGNSDYQAAVERLILAARLSDPKLFLKHMTMNVNMEEVYSLELISALRWLQENMKWAGKVWLFQ"

     misc_feature    1101..1628
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
     misc_feature    1746..1826
                     /gene="TOPAZ1"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
     misc_feature    1842..1931
                     /gene="TOPAZ1"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
ORIGIN      

atggtttttgctttattgtttttttagaactgaaaatcagacaaggtttcacaaggttttcctgtttaagacagactacattatccattatgctgggcactaaaaaagggtaaattgatgtcccagaattctcagattgttatccaaagccatggaggagtttgtcacttttcttcctcctctctactcattgtctgtctcatttagcagttcttgcattctctctgtctgtggtcttcaagacagatttttgttgtgttagacattaacatgacatgacaagtgattgatctggtctactttgaattgctgcaaatatagtacagagatgagggttgtttcaaaggtttaattgtagatcatgtattttttatttataatttgtaggtattctgaattcaccaaaaaatgagcatgtttgctttcaaaaatgctgttcgtttttttctgcttgtttttattttattttgttttaggcttctcattcagtccagcagatcctcgatacgattgaattgccccgtaaatattgcaaattttatttcatgactttgcgtgggtgtgaaagagcaaaatgttggttttggcatgttcctgaacaaggagatgaaaagatttgcatggcaatacttaggacatacattagtatcaaagaatcaggccttctaaaacgtgcagcccaaatatttgtgaaatattacagagaagttactcccggtgtggattttgcttctcaagtgctgaatgatcttctcatttctttgcttgagaactctttgttgcaggaagtatttcacctattgaatgtaactgtacaaatcaatacactgccagctgtaggtgttcttctgaaagtttttgagcatgtggcctctttgaatattacagatgctgtgcctccattaatcagtacttttcgtaagctcattgatgctggtatgttccttgagtttgaacattttgaccgtattattaaggtccttcaccaattgcaagtttccagtcaggaaataaacattgttttgaacataaaatccagatttcaggaaagacattttgaaaagaactggctttttgacttcaacttggcagttgctgaaattcagcattgcaaggaaaaaagtgattggatgaagctgggagctttgtatgttaatgcgagaactggatgtgaacattataatgatcttcagaagctgtctttatgtattgctgaaatactaaccaaagattctgagacacacagaccagaagttcctttttgtgattttgctgatgcagtaataaaaaatccacaacataatgaagaagacagaattttcattggaaggattggaataagtgtaatgtattcttaccacaaagtactgcagtggataaagggaaggaaggttttggataaattgtgtgagatgcagatacattttacagtcttgaaaggtcttctaggtgcagagaggttagcatcaagatgtcaaattgttaataaagctgcagaaatttttcttaaaactggacatttggatggagcaatgtgggtattgagagagtcagagtggaccacaaatgcaccaatgtggccctgtgataaaatggacatcctcaatcgacataatctgctgtgtacactagtggacaaatacctagggaagagtttatacaggcaggcatttgaagttctgcagaacttaccaggctttcaaaatcattctgatactgtagatgtttctcagtacagctgcctttttaacaagttgataaatgcctgttttgagagcaagaaccttggagtctcatcttctgcagtagacttcatgctttcaaaaaatatagcgatagatatttttctacttagaggattaatcacagctttgggaagaagttctttgtggtctaaagctaggacctattacaaaagtgctttatcattgggttgctacccaccactgcagggaaatttatatcacagaattttgacgattccatcttccctgtctgaagttgagatgctgttggccattgaaatatttcttgtttcaaatgccagtgttattcagagtccaatggctattagtcagactcttcagataatactgaaaagatgtgaagatcagacagttcagggtaacagtgactatcaagcagcagtggagagactgatcctggcggctcgtttatcggatccaaagctttttcttaagcatatgacaatgaatgttaatatggaagaagtttacagcttggagcttatatctgctctaaggtggcttcaggagaatatgaagtgggctgggaaagtctggctgtttcagtagtcattaaatagtaaagacttggtttgtaatggctaaagcaatcattgttgaaaataatgcaaattaataaaggcagttcccactgggttcagactgtgccttactgatttacagcaaggcttcatactcgt

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