2024-11-19 20:19:42, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_006445687 1112 bp mRNA linear PLN 26-FEB-2018 DEFINITION PREDICTED: Citrus clementina protein STRICTOSIDINE SYNTHASE-LIKE 4 (LOC18050416), mRNA. ACCESSION XM_006445687 VERSION XM_006445687.2 DBLINK BioProject: PRJNA232045 KEYWORDS RefSeq. SOURCE Citrus x clementina ORGANISM Citrus x clementina Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006262688.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Feb 26, 2018 this sequence version replaced XM_006445687.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Citrus clementina Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1112 /organism="Citrus x clementina" /mol_type="mRNA" /cultivar="Clemenules" /db_xref="taxon:85681" /chromosome="Unknown" gene 1..1112 /gene="LOC18050416" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:18050416" CDS 19..1095 /gene="LOC18050416" /codon_start=1 /product="protein STRICTOSIDINE SYNTHASE-LIKE 4" /protein_id="XP_006445750.1" /db_xref="GeneID:18050416" /translation="
MAPKSFLLACLLAFTLQFFFSPPVSSSASLLSTSKESSSMKDLIKLGEGCVSHPEDVSVVVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTATKEGDVIICDSKKGLFKVTEEGVKVLDPDVRFANDVIDASDGTLYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGIALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNINLAPDGSFWIALIKMNQTGVKAIQNCREKWELLEAYPGLISLLLPMGSDAGARVVKVEGIDGKIIRDFNDPNATYLSFVTSAVEYNDNLFLASLQSNFIGVLPLHPLDTPKPVLATI"
misc_feature 151..>777 /gene="LOC18050416" /note="Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Region: YvrE; COG3386" /db_xref="CDD:442613" misc_feature 430..681 /gene="LOC18050416" /note="Strictosidine synthase; Region: Str_synth; cl22863" /db_xref="CDD:354965" ORIGIN
agtagtgatttcaagctcatggctccgaagagtttcctgctagcttgtttacttgcttttactctacaattcttcttctcgcctccagtatcatcttcagcttctcttctttccacctccaaggaaagctcctctatgaaggatttgattaaacttggagaaggatgtgtgagccacccagaggatgtttctgttgtggttagaaagggtgcgctgtatacagctactaatgatggttgggtcaagtatttcatcctccataatgaaaccttggttaattggaagcacatagacagtcaatctcttcttggactcacagcaacaaaggaaggtgacgtcattatatgcgacagtaaaaaaggtttgtttaaggttaccgaagaaggcgtaaaggttcttgatccagatgtaagatttgcaaatgatgtgatcgatgcatcagatggcacgttgtattttactgtctcaagcaccaaatatacccccgcagatttctacaaagacatggctgagggaaatccttacggccagttgctcaaatatgatcctaaatcgaaccaaacaacagttttgcaagagggattttactttgctaatggcattgcactctcaaaagatgaagactttgtggtcgtttgtgaatcatggaaattccgatgcagaagatattggctgaagggcgatcgcaatggaacattagatacttttgctgaaaaccttccaggtggacctgataacatcaatcttgcccccgatggctctttttggattgctttaatcaagatgaatcagactggggtgaaggctatccaaaactgcagggagaaatgggaactattggaagcatatccaggattaatcagcctactcctccctatgggcagtgatgcgggtgcaagagtagtcaaagtcgaaggaattgatggcaaaataatcagggattttaacgatccgaatgcaacctatttatcatttgtcacttcagctgtggagtataatgacaatctcttcttggctagccttcaatcaaatttcattggggtactgccactccatcccctcgatactccaaaaccagtactggctaccatatagaaacaggatgcatgcat
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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