LOCUS       XM_006238756            3590 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus claudin 19 (Cldn19), transcript
            variant X1, mRNA.
ACCESSION   XM_006238756
VERSION     XM_006238756.5
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086023) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_006238756.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3590
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3590
                     /gene="Cldn19"
                     /gene_synonym="claudin-19"
                     /note="claudin 19; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 27 ESTs, 33 long
                     SRA reads, 13 Proteins"
                     /db_xref="GeneID:298487"
                     /db_xref="RGD:1305000"
     CDS             426..1100
                     /gene="Cldn19"
                     /gene_synonym="claudin-19"
                     /codon_start=1
                     /product="claudin-19 isoform X1"
                     /protein_id="XP_006238818.1"
                     /db_xref="GeneID:298487"
                     /db_xref="RGD:1305000"
                     /translation="

MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKGRVAISGGALFLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAILGGSFLCCTCPEPERANSIPQPYRSGPSTAAREPVVKLSTSVKGPLGV"

     misc_feature    435..971
                     /gene="Cldn19"
                     /gene_synonym="claudin-19"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     polyA_site      3590
                     /gene="Cldn19"
                     /gene_synonym="claudin-19"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tttgggagggatgagaagaatcctagggcactgaaatcacactctgaaggggttcccctggctgggaggggagaagtcactcctcctagcccctcccttccttactattgagccgagaaaggcaggggtaccccagcttggactctaggttccgccctctgctcccaagaaactgggcaagagctctgctggggactggctgtgggcgggttttggccttttccagccccaaggccgccccctgcattctggaatccagcagccactgcctttgctgagctgaccggccagccatcccctctcctcctcttttcctgtgccacttagttccccttttccagctgttcctcttaccatgaccatagcgctcctccagaccctggcccatctctgagtcctggaaccctcagactcctacctgggccatggccaactcaggcctccagctcctgggctacttcctagccttgggtggctgggtgggcatcatcgccagcaccgccctgccacagtggaagcagtcctcctatgcaggcgatgccatcatcactgccgtgggcctctacgaagggctgtggatgtcctgcgcctctcagagcaccgggcaggtgcaatgcaaactctacgattcactcctggccctggacggtcatatccagtcagcaagagccctgatggtggtggctgtgctcctgggctttgtggccatggtgctcagtgtcgtgggcatgaagtgtactcgggttggagacagtaaccccactgccaagggccgtgtggccatctccggaggtgctctcttcctcttggcgggtctctgtactttgactgctgtctcatggtacgctaccctggtgacccaggaattcttcaaccccagcactcctgtcaacgccaggtatgaatttggtccagctctgttcgtcggctgggcctctgctgggctggccatcctgggcggttcctttctctgctgcacatgcccagagcctgagagagccaacagcatcccgcagccctatcgctctggaccctcaacggctgcccgagaacccgttgttaagttgtccacctcggtcaagggccccctgggtgtgtaaaggccaggttcccagccaggccctgccccctaccatctctagactgtgtgtttgatatttctggaaagagaagcgaacattcagccccaagtgtgatgtcatgctatctgttcccatgcgcctagggtggggcctggactagagaggccagagccagctcttggggtgaggtgggctccagggtacaggcagagcaggaagcagttagtttcctgctttgtatctctgcccgccccaccttggagtctggtaccagaacttccatgagggaagatcacagctacccctggaggcgtcacctaacgcctgcctggcctaataaaggagcaagacctcagggtgaggaagccctggcacggagaccattccataggtagaatgttctaggccctccctgggagccctcctgagggaaaagatagtttctgtgaggcccaaccgtaggggctcccttggtgatggaagggaatggagaggagcatggatggtatcaggacaaccccaagccaactccaaagccctccatgcaactgttatcctactcctgcaatgactgtcaacgctccctcaccctgaagtgtagtcagatgacaggacttctggtcttgaaatccaggtatgacgtactagaaaaggttaagtccttcaaggcgctgagagaaaccagcccagggaagcaaagggccagcagtgtccttcatcctccctatccagagagtgccggcccctctcttcactcataggcttctgccacccaagcctctccctggactccaggtctgtccctctccagggacgaggtgtccaccactctcgtcttgcttcccacatgccttccttgttagcccgctggtgtctacaaccgcgtctcccaccaagtgaaccccaggagccagtacagcttctgtgcagccctgaggtgcggataccaaaacattatagctgacggtggggagggcggggggaaagcaggtgaccaagcgcttctgtgctcaggtaatcacatacctgatgaactgctgaccaattcatcttctgacggatggtagccataagcccccgtggacacctctgatcctaaacaagtttcccaagggaggccccttgcaccataagtgccacagaagagctctctccaagtgcccaaagccatccggtgatccttggccttaggaccacactggagtcatttaagtggatgcccagcctccacccagacacaatgatttaattggtctagtggacccaggcttcagaattcacacagctccttcgaagtatgtggttcatctaggggtaactccttgaggcccacactcctgaccattctggagggatctgcagagggtggaaggagcctaccagaagacagtgggggagaggcaagactagaaaggaagtcctgtccacctcctgcctttccggagtcctgaccactggaggagacgcctatatccttcccattgatgtctctttgtgcttaaggaattcaactttgaatcctgtcacttgcagcctgactaactcagagcttgaaacctgtgaaccaagtgggacacagacagaccctccacagatctggtacttagcagcccttggtatttggttgtgaagctggcaggaagccacatgattcttcagagtccgagggctgggcggttcaagacatggtggtggggatcgtagaggcagaatgtgttggctacatcttgtggttgtcaggagtgggctccatgcaaggacaggagctgacagtggggtggcattgtctgttcctctattaaaggaagctcattctagccatacatactggagcctggaagggcagagtcatccacctttgatatttacatttgatccacatttgatatttacaccctgattaaaacccgcgaggtactgggggtgggaagggagagtgtgggagaaattgaaggagttttaagctaagagtttggggaatgtgatctcctgaagcaaacccattcaaacatccaagtctgttgtttactgttctaatctcaaggctgaaggatccaggaaagactggggaagatgaggctgactcaaaagggatggttctaaagttactgccgttgctttagtcccagaagtgaaactggcaagttagacattttgattccagaaggatggtagctccgtgttcctgaagttccaggtcctggggaaacagaccaggaagctgcaggctgggaagaagcttgaagatcattatggctggggcagtttcaagaagttgttacttttgtgttacataacactgttgctttgtgtgataatgacgctgatccttatctggcagaggtacgcctggaagcatgatggctggatttactttaactttttaaaacaggttcacaggcaaggagagctgtgatgctgggacgagccagcggctgacagggttcactctacccatttgtatgtttgctaatgaaagaaaaataagaaataaaaagtttgaaacga

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