2024-11-19 20:30:59, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NR_076276 2883 bp rRNA linear BCT 03-FEB-2015 DEFINITION Porphyromonas gingivalis strain ATCC 33277 23S ribosomal RNA gene, complete sequence. ACCESSION NR_076276 VERSION NR_076276.1 DBLINK Project: 188943 BioProject: PRJNA188943 KEYWORDS RefSeq. SOURCE Porphyromonas gingivalis ORGANISM Porphyromonas gingivalis Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas. REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis JOURNAL DNA Res. 15 (4), 215-225 (2008) PUBMED 18524787 REFERENCE 2 (bases 1 to 2883) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (14-FEB-2013) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2883) AUTHORS Hattori,M., Yamashita,A., Toh,H., Oshima,K. and Shiba,T. TITLE Direct Submission JOURNAL Submitted (10-APR-2007) Contact:Masahira Hattori University of Tokyo, Graduate School of Frontier Sciences; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan URL :http://www.cb.k.u-tokyo.ac.jp/hattorilab/ COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to AP009380:231618-234500. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2883 /organism="Porphyromonas gingivalis" /mol_type="rRNA" /strain="ATCC 33277" /culture_collection="ATCC:33277" /type_material="type strain of Bacteroides gingivalis" /db_xref="taxon:837" rRNA 1..2883 /product="23S ribosomal RNA" ORIGIN
aagggcagacggtggatgcctaggctctcggaggcgaagaaggacgtgataagctgcgaaaagctgcgggaatcggcacatacgaattgatccgcagatatccgaatggggcaacccgtcaggccaaggcctgacacatgaattgatttcatgagcgaacgcggggaactgaaacatctcattacccgtaggagaagaaaacaaaagtgattccctcagtagtggcgagcgaacggggattagcccaaaccggctttgtttcggcaaagtcggggtaataggacttcgacaaaagtttaatgatagatataggagaacctactggaaagtatggccgaagagcatgaaagctgcgtatccgacatatcgaaccatagacgacggagcacctgagtagcgcgggacacgagacatcctgtgtgaattggcggggcccatcccgtaaggctaaatactcccgagagaccgatagtgaaccagtaccgtgagggaaaggtgaaaagaacctcgaacagaggagtgcaatagaccctgaacccgtctgcctacaagcggtaggagcgccattaaggtgtgactgcgtgccttttgcataatgaacctacgagttactgtttgtggcaaggttaattgttataatcaagacaaggagccgaagcgaaagcgagtcttaaaagggcgcccatttagtcacgagcagtagacgcgaaaccaagtgatctacccttggtcaggttgaaggttaggtaacactaactggaggaccgaatcggtaagcgttgaaaagctttcgaatgaactgagggtaggggtgaaaggctaatcaaacttggagatagctcgtactccccgaaatgcatttaggtgcagcctgttggatgttatcatgaggtagagcgactgattggatgcgagggtttcaccgcctatcaagtccagataaactccgaatgcatgataattgaccgatggagtgagggcatgggtgctaaggtccatgtccgagaggagaagaatccggaccaccggctaaggtcccgaaataattgctaagttgtaaaaacgaagtcaagatgcagagacagctaggatgttggcttggaagcagccattcatttaaagagtgcgtaacagctcactagtcgaggattttggcatggataatacacgggcataagcaatttaccgaagccgtgggatataatatatatcggtaggggagcattccagcgacgtagaagggaaaagggcgactttttctggagtttctggaaaagcaaatgtaggtataagtaacgataaagggggcgagaacccccctcgccgaaagaccaaggattcctgatcaacgctaatcggatcagggttagtcggggcctaaggataagccgaacggcgattccgatggaagaaccggttaatattccggtactgatacagagagcgatgtggtgacggagaagtgacagtccggccgtctgacggaataggcggttaaagggtgtagatgttgatcggggtaggcaaatccgccctgagagtcgaacctgacagtacccggagtacatgtacgaagggataaggatgtaaaccggctcccaagaaaacccgctaagcatatttctgtgttacccgtaccgtaaaccgacacaggtggttgggttgagtatactaaggcgctcgagagattcgcggttaaggaactaggcaaaatggtcctgtaacttcgggagaaaggacgcctgtctccggacaggccgcagaaaccaggcccaggcgactgtttaacaaaaacacaaggctatgcaaaaaagcaatttgaggtatatagtctgacacctgcccggtgctggaaggttaagaggaggagtcatcgtcaagagaagctctgaattgaagccccagtaaacggcggccgtaactataacggtcctaaggtagcgaaattccttgtcgggtaagttccgacctgcacgaatggtgtaacgatctgggcactgtctcaaccgcgatctcggtgaaattgtagtatcggtgaagatgccgattacccgcaacgggacgaaaagaccccgtgaacctttactatagctttacattgtatttgggcatcagatgtgtaggataggccggaggcagagaagcgggtacgccagtattcgtggagtcgatgttgaaatacggcccttttgatgtttggatactaactcgcggcgtgcgaggacactgtatggtgggtagtttgactggggtggtcgcctccaaaagcgtaacggaggcttctaaaggtaccctcaggccgattggtaaccggtcgcagagtgtaatggcacaagggtgcttgactgggagacaaacaagtcgcacaggtaggaaactagagcatagtgatccggtggttccgcatggaagggccatcgctcaaaggataaaaggtactccggggataacaggctgatcactcccaagagctcatatcgacggagtggtttggcacctcgatgtcggctcgtcacatcctggggctggagaaggtcccaagggttgggctgttcgcccattaaagtggcacgcgagctgggttcagaacgtcgtgagacagttcggtctctatctgttgtgggcgcaggaaatttgcgagggtctgacactagtacgagaggaccgtgttggacagacccctggtttaccggttgtaccgccaggtgcaccgccgggtatccacgtctggtaaggataagtgctgaaagcatctaagcacgaagccggcctcaagataagatttccataaatagggtggttaaagactatgaccttgataggctgcaggtgtatgattggtaacaattaagccgagcagtactaatagcccgaaacttttgt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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