LOCUS       NM_214561               1402 bp    mRNA    linear   INV 30-JUL-2024
DEFINITION  Strongylocentrotus purpuratus homeobox (H-6 family) (HMX), mRNA.
ACCESSION   NM_214561
VERSION     NM_214561.2
KEYWORDS    RefSeq.
SOURCE      Strongylocentrotus purpuratus (purple sea urchin)
  ORGANISM  Strongylocentrotus purpuratus
            Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
            Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea;
            Strongylocentrotidae; Strongylocentrotus.
REFERENCE   1  (bases 1 to 1402)
  AUTHORS   Tu,Q., Cameron,R.A., Worley,K.C., Gibbs,R.A. and Davidson,E.H.
  TITLE     Gene structure in the sea urchin Strongylocentrotus purpuratus
            based on transcriptome analysis
  JOURNAL   Genome Res 22 (10), 2079-2087 (2012)
   PUBMED   22709795
REFERENCE   2  (bases 1 to 1402)
  AUTHORS   Martinez,P. and Davidson,E.H.
  TITLE     SpHmx, a sea urchin homeobox gene expressed in embryonic pigment
            cells
  JOURNAL   Dev Biol 181 (2), 213-222 (1997)
   PUBMED   9013931
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from D85079.1.
            
            On Aug 31, 2012 this sequence version replaced NM_214561.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: D85079.1, JT104524.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01096960, SAMN01103178
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1402              D85079.1           34-1435
FEATURES             Location/Qualifiers
     source          1..1402
                     /organism="Strongylocentrotus purpuratus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7668"
     gene            1..1402
                     /gene="HMX"
                     /gene_synonym="homeobox; SpHmx"
                     /note="homeobox (H-6 family)"
                     /db_xref="GeneID:373358"
     misc_feature    110..112
                     /gene="HMX"
                     /gene_synonym="homeobox; SpHmx"
                     /note="upstream in-frame stop codon"
     CDS             122..1339
                     /gene="HMX"
                     /gene_synonym="homeobox; SpHmx"
                     /codon_start=1
                     /product="homeobox protein Hmx"
                     /protein_id="NP_999726.1"
                     /db_xref="GeneID:373358"
                     /translation="

MDSSRELSGEEPRSPSPRHETSKMRLSPDRPSHHPARPPASLASQPLRPAHYQDDDDSYRTHTPPPSQPRTKGFSIESILSPTDKHRKSPRSPPMSPSSPSMSSNGYSEGPIYGSTRHPLSATVPGLGRAALDELAAHRAAALHIPSAALPFSHLAHNPAFYAWMHGASFLHYHGMPAFNSHPPIAQPLTNSSRLAMAKDISPRPTQSHSSFGEEGGEKDSRGRESPDSEHRRNNGHEEDDDDDDDQSPQKKKKKTRTVFSRSQVFQLESTFEVKRYLSSSERAGLAANLHLTETQVKIWFQNRRNKWKRQMAAELESANLAHAAQIRAQANLAQVSAVHVHAYAQRMVRVPILYHENHPTTGSSLHSPNILPFPMPYPGSYHQISSSTSSTSSARSPTSTSIVT"

     misc_feature    122..475
                     /gene="HMX"
                     /gene_synonym="homeobox; SpHmx"
                     /note="propagated from UniProtKB/Swiss-Prot (Q26656.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    722..898
                     /gene="HMX"
                     /gene_synonym="homeobox; SpHmx"
                     /note="propagated from UniProtKB/Swiss-Prot (Q26656.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    881..1051
                     /gene="HMX"
                     /gene_synonym="homeobox; SpHmx"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    1268..1336
                     /gene="HMX"
                     /gene_synonym="homeobox; SpHmx"
                     /note="propagated from UniProtKB/Swiss-Prot (Q26656.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
ORIGIN      

cggccgcttggaaatgctagcttgtatttgaatgtattaatgatttgaattcgtcgtttgaaggttgaagttatcggagaagtatcacttttggctctttcaaacattttgatcgttatctatggacagtagccgtgaactatcaggagaggaacccagatctccatctccacgccacgaaacgagcaagatgcgtctatcacctgaccgacccagtcatcacccagcccgaccccccgcatctctggcgtcgcaaccactccgccctgctcattatcaagacgacgatgatagctaccgtacacacaccccgccaccgagccaaccgagaacgaagggcttcagcatcgagagcattctctcaccgacggacaagcatcggaagtcgccgagatcacccccgatgtcgccatccagtccgtcgatgtccagcaatgggtacagtgaagggcccatatacggctccactcgacacccactatcggcgaccgttccggggttgggacgggcggcgttggatgagcttgccgctcaccgagcagcggctctccatatcccttctgccgcactccccttctctcacctagcgcacaaccctgccttttatgcctggatgcacggggcatccttcttgcattatcacggcatgccggctttcaactcgcacccaccgatagcccagccactaaccaacagtagccgtctcgctatggccaaggatatctcacctcgaccaactcaatcccatagcagcttcggcgaggaaggcggcgagaaagacagtcgtggtcgcgaatcgcccgattccgaacaccgtcgaaataatggacacgaagaagacgatgatgacgacgacgatcaatcgccgcaaaagaagaagaaaaagacgagaactgtcttttcgcgaagtcaggtctttcaacttgaatcgacgtttgaagtgaagcggtacctgtctagttctgagcgggctggactagcagcgaatcttcacctgacggagacccaggtcaagatctggttccagaaccgtcgcaacaagtggaagcggcagatggccgccgagttggagtcggccaatctggctcacgccgcccagatacgcgctcaggcaaacctcgcgcaggtcagcgctgtgcatgttcatgcgtatgcgcagcgtatggtccgcgtaccgatactctatcacgagaatcatcccaccacgggttcgagtctgcactcgcctaacatcttgcctttcccgatgccgtaccccggttcgtatcatcaaatcagctcgtcaacatcgtctacatcatcagcgagatcgcccacgtcaaccagtattgtgacatgaagtgtgacccgttgataacggaacaatgctattcgtatgaagaaggcaactttcccggattct

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