LOCUS       NM_001419905            1184 bp    mRNA    linear   PLN 14-JUN-2024
DEFINITION  Oryza sativa Japonica Group WUSCHEL-related homeobox 4-like
            (LOC4337218), mRNA.
ACCESSION   NM_001419905 XM_015779881
VERSION     NM_001419905.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1184)
  AUTHORS   Kawai,T., Shibata,K., Akahoshi,R., Nishiuchi,S., Takahashi,H.,
            Nakazono,M., Kojima,T., Nosaka-Takahashi,M., Sato,Y., Toyoda,A.,
            Lucob-Agustin,N., Kano-Nakata,M., Suralta,R.R., Niones,J.M.,
            Chen,Y., Siddique,K.H.M., Yamauchi,A. and Inukai,Y.
  TITLE     WUSCHEL-related homeobox family genes in rice control lateral root
            primordium size
  JOURNAL   Proc Natl Acad Sci U S A 119 (1) (2022)
   PUBMED   34983834
  REMARK    GeneRIF: WUSCHEL-related homeobox family genes in rice control
            lateral root primordium size.
REFERENCE   2  (bases 1 to 1184)
  AUTHORS   Chen,R., Xu,N., Yu,B., Wu,Q., Li,X., Wang,G. and Huang,J.
  TITLE     The WUSCHEL-related homeobox transcription factor OsWOX4 controls
            the primary root elongation by activating OsAUX1 in rice
  JOURNAL   Plant Sci 298, 110575 (2020)
   PUBMED   32771139
  REMARK    GeneRIF: The WUSCHEL-related homeobox transcription factor OsWOX4
            controls the primary root elongation by activating OsAUX1 in rice.
REFERENCE   3  (bases 1 to 1184)
  AUTHORS   Yasui,Y., Ohmori,Y., Takebayashi,Y., Sakakibara,H. and Hirano,H.Y.
  TITLE     WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf
            development in rice
  JOURNAL   PLoS Genet 14 (4), e1007365 (2018)
   PUBMED   29684018
  REMARK    GeneRIF: WOX4 regulates multiple genes, including those responsible
            for cell cycle progression and hormone action, consistent with the
            effects of WOX4 downregulation on leaf phenotypes. Collectively,
            these results suggest that WOX4 acts as a key regulator at an early
            stage of leaf development.
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014960.1 and JF836159.1.
            
            On Apr 21, 2023 this sequence version replaced XM_015779881.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: JF836159.1, AJ556181.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN04338662, SAMN04338664
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                AP014960.1         33096555-33096625   c
            72-1184             JF836159.1         1-1113
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..1184
                     /gene="LOC4337218"
                     /gene_synonym="hb3; OsJ_015698; OsWOX4; WOX4"
                     /note="WUSCHEL-related homeobox 4-like"
                     /db_xref="GeneID:4337218"
     exon            1..406
                     /gene="LOC4337218"
                     /gene_synonym="hb3; OsJ_015698; OsWOX4; WOX4"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    137..139
                     /gene="LOC4337218"
                     /gene_synonym="hb3; OsJ_015698; OsWOX4; WOX4"
                     /note="upstream in-frame stop codon"
     CDS             161..871
                     /gene="LOC4337218"
                     /gene_synonym="hb3; OsJ_015698; OsWOX4; WOX4"
                     /note="WUSCHEL-like homeobox protein; Homeobox protein
                     HB3; LOC_Os04g55590; OSJNBa0010D21.16; OSJNBb0059K02.2"
                     /codon_start=1
                     /product="WUSCHEL-related homeobox 4"
                     /protein_id="NP_001406834.1"
                     /db_xref="GeneID:4337218"
                     /translation="

MRLHHLHVAYLDHKASSSSSSPAPPSISPSSIPGSAAFPAFSFKCLRPLAPKISLPEPRKMIAPPDFVVPRARNASKLLNYTVQVPAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQKQKRAALLTLSTLDPSLLPATANETKEAPEKKEKDVEDGLASCKRRCKAWGDGAGDGDAVVATEAAGGCTDEVTLELFPLHPQGKA"

     misc_feature    431..610
                     /gene="LOC4337218"
                     /gene_synonym="hb3; OsJ_015698; OsWOX4; WOX4"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    665..724
                     /gene="LOC4337218"
                     /gene_synonym="hb3; OsJ_015698; OsWOX4; WOX4"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7XTV3.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            407..688
                     /gene="LOC4337218"
                     /gene_synonym="hb3; OsJ_015698; OsWOX4; WOX4"
                     /inference="alignment:Splign:2.1.0"
     exon            689..1184
                     /gene="LOC4337218"
                     /gene_synonym="hb3; OsJ_015698; OsWOX4; WOX4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

caaaccctcgctgcctagctttatcgccttctccccgtataaaaacacgccaagatcacgcttgctcgcttagccctagctacaacaatctaatctatctctgcttccaattcccatacaaagctagagctaactctgagttaaactgcgacattacacaatgaggcttcaccatctgcatgtggcctacctggatcacaaagcgtcgtcgtcctcgtcgtctccggcgccaccatccatctccccgtcgtcgatccccggatcggccgccttccctgctttctccttcaaatgcctccgcccgctcgcgcccaagatctcgctgccggagccgaggaagatgatcgcgccgccggacttcgtcgtccctcgcgccagaaacgcttccaagctgctcaactacactgtgcaggtgccggcggcggggacgacgaggtggaacccgtcggcggagcagataaaggtgctggagatgctgtaccgcggcgggatgcggacgccgaactccgtccagatcgagcggatcacggaggagctcggcaagtacggccggatcgagggcaagaacgtcttctactggttccagaatcacaaggcccgcgagcgccagaagcagaagcgcgccgccctcctcaccctcagcacgctcgacccttccttgctgcccgctaccgctaacgaaaccaaagaggcaccggagaagaaggagaaggacgtggaagatggattggcgagctgcaagcggcggtgcaaggcgtggggtgacggcgccggcgatggagacgcggtggtggcgacggaggcggccggcggctgcaccgacgaagtgaccctggagctcttcccgttgcatccccagggaaaagcttaattagctgcatgtgcatatatgtatactccgtcgatcgtctgtcacgcatggtatcatcatggattggccgggttgatgttgattgtggaaattaaattccctcgtctttgcgtgtgcattgtgttgtagttggtcgatcgtgtgtttggattgctttgaacatataatgcattgtgttgtggccgggtgcttgatcggaagaatataatcagtagttccaaactggaattagcagttgctcatatacatgcatgaatggtgtagagatcacgcaactatatatgcaaggtttggatatgctaattagggctta

//